Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7 132 1e-25 seq10 118 2e-21 >seq7 Length=14042894 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||| ||||| ||||| || |||| ||||||||||| || || Sbjct 12378445 CGCAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 12378504 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| || | ||||||||| ||| || ||| Sbjct 12378505 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 12378564 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||||||| || | |||||| | | || || || | Sbjct 12378565 TCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGG 12378624 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || || || Sbjct 12378625 GTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTG 12378662 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || || || || ||||| |||| ||||||||||| | || | ||||| Sbjct 12378681 CAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 12378740 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| || || ||||| || Sbjct 12378741 CTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 12378800 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 12378801 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 12378860 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || || || || || || |||||| Sbjct 12378861 CTTGCCTGTCAGGGTCTTGACGAAGATCTG---CATTTT 12378896 >seq10 Length=11116859 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| ||||| ||||| || |||| ||||||||| | || || | || || Sbjct 3464521 CAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3464580 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| ||| ||| ||||| || Sbjct 3464581 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATC 3464640 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || || | ||||| || Sbjct 3464641 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3464700 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 3464701 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 3464730 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||| | || || | || || Sbjct 3464749 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3464808 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| || | ||||||||| || ||| ||||| || Sbjct 3464809 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3464868 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 3464869 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 3464928 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 3464929 CTTGCCAGTCAGGGTCTTGACAAAGATCTG 3464958 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||| || |||| || || | || || Sbjct 3465538 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGCCCGTC 3465597 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| ||| ||| ||||| || Sbjct 3465598 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 3465657 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || || | ||||| || Sbjct 3465658 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 3465717 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 3465718 CTTGCCAGTCAGGGTCTTGACAAAGATCTG 3465747 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||||| | || | || || Sbjct 3464977 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTC 3465036 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| ||| || ||||| || Sbjct 3465037 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 3465096 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 3465097 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3465156 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 3465157 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 3465186 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||| || |||| || || | ||||| Sbjct 3464200 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGGCCATC 3464259 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 3464260 TTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3464319 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 3464320 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3464379 Query 199597 CTTACC 199602 ||| || Sbjct 3464380 CTTGCC 3464385 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||| | || || | || || Sbjct 3465205 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3465264 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 3465265 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3465324 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 3465325 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3465384 Query 199597 CTTACCCGTGAGAGTTTT 199614 ||| || || || || || Sbjct 3465385 CTTGCCAGTCAGGGTCTT 3465402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178886843549167