Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10 145 9e-30 seq7 140 4e-28 >seq10 Length=11116859 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||||| ||||| ||||||||||| || |||||| || Sbjct 3464747 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCG 3464806 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| | ||||||||| | || | || ||||| Sbjct 3464807 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTA 3464866 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | || || |||| |||||| Sbjct 3464867 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 3464926 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 3464927 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| |||||| |||| || ||| || ||||| |||||||||| Sbjct 3464505 TGCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGG 3464564 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || |||||||| || || || |||| | ||||||||| | | Sbjct 3464565 ACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAG 3464624 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| |||||| ||| | || | | ||||| || | |||| Sbjct 3464625 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 3464684 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 3464685 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3464733 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| |||||| |||| || ||||| ||||| ||||||||||| Sbjct 3465191 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3465250 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || |||||||| || || || |||| | ||||||||| | || Sbjct 3465251 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3465310 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||||| || | | ||||| || | ||||| Sbjct 3465311 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 3465370 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 || | |||||||| ||||| ||||| || || Sbjct 3465371 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTT 3465402 >seq7 Length=14042894 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||| ||||||| ||| ||||| ||||| |||||||| || Sbjct 12378667 CCACCTCTCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12378726 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 12378727 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 12378786 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | |||||||| | || || Sbjct 12378787 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 12378846 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | |||||||| ||||| ||||| || || || ||||| |||||||| Sbjct 12378847 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATTTT 12378896 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| || ||| || ||||| |||||||| || || ||||| | Sbjct 12378451 CGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 12378510 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || || ||| Sbjct 12378511 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 12378570 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | || || || | |||||| Sbjct 12378571 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 12378630 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| ||||| Sbjct 12378631 GTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222142330520