Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 156 4e-33 seq10 145 8e-30 seq12 93.3 4e-14 >seq7 Length=14042894 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || || ||||| ||||||||| | || |||||| | Sbjct 12378897 AAAAATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCC 12378838 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || ||||| | | | | | || | || |||| ||||| || || || ||| | || Sbjct 12378837 CAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGA 12378778 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 12378777 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTA 12378718 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| | || |||||| | |||||||| ||||||| || Sbjct 12378717 CAACATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGAGAGGTGG 12378667 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| Sbjct 12378665 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 12378606 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || || || | ||||| Sbjct 12378605 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCA 12378547 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 12378546 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAA 12378487 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || ||||| | || ||||| Sbjct 12378486 CATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCG 12378451 >seq10 Length=11116859 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 3464961 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3464902 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || || || |||||| | ||||| Sbjct 3464901 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3464842 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| |||| ||||||||| |||||||||| Sbjct 3464841 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAAC 3464782 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || ||||| |||||||||| Sbjct 3464781 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 3464747 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 3464733 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 3464674 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| | ||||| Sbjct 3464673 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCA 3464615 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 3464614 GCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAA 3464555 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||||||||| ||||||| ||| Sbjct 3464554 CATCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 3464506 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 3465189 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 3465130 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | ||||| Sbjct 3465129 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 3465070 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3465069 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTCTCTGACTACAAC 3465010 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || ||||| |||||||||| Sbjct 3465009 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 3464975 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38259 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACG 38318 || || || || ||||| ||||||||| |||| || ||| ||| |||| | | | | Sbjct 3465402 AAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATTGAGAAT 3465343 Query 38319 CTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTAC 38378 | || | || |||| || || || || |||||| | ||||| ||| |||| || | Sbjct 3465342 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTT 3465283 Query 38379 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCG 38438 || || || |||||||| |||| ||||||||| ||||||||||||||| |||||| | Sbjct 3465282 GCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCC 3465223 Query 38439 ACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| |||||||||| ||||||| || Sbjct 3465222 ACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3465191 >seq12 Length=147836772 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 20187052 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 20187111 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || ||||| ||||||||||||| ||| || || || || || | Sbjct 20187112 TCAGCCAAAATATAGCAGCGAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20187171 Query 133037 CCACCA 133042 | |||| Sbjct 20187172 CAACCA 20187177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158413779840