Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq24 255 7e-63 seq17 82.4 1e-10 >seq24 Length=61081188 Score = 255 bits (282), Expect = 7e-63 Identities = 1019/1595 (64%), Gaps = 28/1595 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 57335811 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATTCGGTCAATGTCGTCCTTGCT 57335752 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || || ||||| | || |||| | ||| || | Sbjct 57335751 GAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTGCCCGTGCTCTTGTCCAC 57335692 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || || |||| ||||| || ||||| | || || | || | || || || Sbjct 57335691 GGCGCTGACGTTCAGGATACCGTTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 57335632 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || || | ||||| | || || || |||||||| | Sbjct 57335631 TCCCCTGGGTGCTGGGGGGATGCCTGTGAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 57335572 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| || || || | | ||| || | | || || || Sbjct 57335571 TGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGCAC-GCTGCTCTGGTTGTCCGAGT 57335513 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | | Sbjct 57335512 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCAG 57335453 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || |||||||| | || Sbjct 57335452 TCATCACTCCTCCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAAGAGCAGCA 57335393 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || || || | || ||| | | ||| || ||||| || | || |||| Sbjct 57335392 GATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCTCCGT 57335333 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||||||||| || | || || || ||||| || || || ||||| Sbjct 57335332 AAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCCT 57335273 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 || || | || || || ||||| || || || ||||| |||| ||||| || | | Sbjct 57335272 GTAGCAGCTTCTGGATCTTGGGGATGCGGGTAGAGCCACCCACCAGCACGATCTCCTGGA 57335213 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | || || || || |||| | Sbjct 57335212 TCTGGCCCTTGTCGAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCCC 57335153 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| |||||||||||||| || ||||| |||| Sbjct 57335152 GGAAAAGGTCAGCATTGAGCTCCTCAAAACGGGCACGGGTAATGGAGGTGTAGAAGTCAA 57335093 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTC 7343 ||| || | | || ||||| |||||| | | || ||| || || | || | Sbjct 57335092 TGCCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGC 57335036 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||||| | |||||| ||||| || | || | | || ||| ||| || | ||| | Sbjct 57335035 GCTTTGCCCTCTCACAAGCCGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCAATGT 57334976 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 57334975 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 57334916 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || || || || || || | || || ||||| || || | || | Sbjct 57334915 CCTCCCCACCCAAATGGGTGTCACCAGCCGTGGACTTTACCTCAAAAATCCCATCCTCGA 57334856 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || || || ||||||||||| ||||| |||||| | | Sbjct 57334855 TGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTCT 57334796 Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | | | ||||| || || ||||| |||||||| || || || || || | Sbjct 57334795 CTCCAGCCCGGGTTCCCTTCTTGTCCAGGCCGTAAGCGATAGCGGCTGCAGTGGGCTCGT 57334736 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || ||||| | ||| ||||| | || || | || || || || || || || | Sbjct 57334735 TGATGATACGCATCACGTTGAGGCCTGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGCT 57334676 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || || || ||||| || || || || | ||| || | | || || || |||| Sbjct 57334675 GGGAGTCATTGAAGTACGCGGGCACTGTGATGACAGCATTCTGCACCTTGCACCCCAGAT 57334616 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || || || || ||||| ||||| || ||||| || ||||| || | | | Sbjct 57334615 AGGCCTCGGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCCG-GGAAG 57334557 Query 7818 ACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 | || ||| | || || || | || || | | | |||| || || | || Sbjct 57334556 AAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTCA 57334503 Query 7877 ATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | ||| | | | ||||| ||||| || || ||| |||| | |||| Sbjct 57334502 TTCACCACACGGAAAGGCCAATGCTTCATGTCTGACTGCACCGTGGGGTCATCATACTTG 57334443 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| || ||||| |||||||| | ||||| |||||||||| ||| |||||| Sbjct 57334442 CGGCCGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTTC 57334383 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || |||||||| || || || || || || ||||| || || || || Sbjct 57334382 TTGGCAGCATCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATAACTGGGTGTG 57334326 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || || || || || ||||| || || || || || | ||| || |||| || ||| Sbjct 57334325 GTGCGGTTACCCTGATCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCACG 57334266 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || ||||| || || | || || ||||| || Sbjct 57334265 CAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 57334231 >seq17 Length=7077728 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || ||||| || || || || || || || || || || || || || | Sbjct 2609421 TTCTTGTCCAGCCCGTAGGCAATGGCAGCTGCTGTGGGCTCGTTGATGATCCGCAGCACG 2609362 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| ||| | ||||||||||| || || || || || ||||| || ||| Sbjct 2609361 TTGAGCCCTGCAATGGTTCCGGCATCTTTCGTGGCCTGGCGCTGGGAGTCGTTGAAATAG 2609302 Query 7715 GCCGGGACCGTTACGACCGC 7734 || ||||| || || || || Sbjct 2609301 GCTGGGACAGTCACTACTGC 2609282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114531992840