Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10 105 4e-18 seq7 98.7 6e-16 >seq10 Length=11116859 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 3464963 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 3465022 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | |||||||| | || Sbjct 3465023 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 3465082 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 3465083 ATACCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 3465140 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 3465141 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3465189 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| ||| ||||| |||||||| || || Sbjct 3465524 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGAC 3465583 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | |||||||| | || Sbjct 3465584 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 3465643 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || | |||| || |||||| Sbjct 3465644 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 3465703 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || ||||| |||||||||||||| || Sbjct 3465704 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTT 3465753 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 3464543 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAG 3464602 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 3464603 ATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 3464662 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 3464663 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 3464722 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3464723 AAGATCTGCAT 3464733 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 3464735 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3464794 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || || || || || | ||||||||| | || Sbjct 3464795 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 3464854 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || ||||| ||||| || || || | |||| || ||| | Sbjct 3464855 ATGCCTTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 3464912 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 3464913 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 >seq7 Length=14042894 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 12378702 TTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 12378761 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 12378762 GATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 12378819 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | ||| ||||| || || || || ||||| Sbjct 12378820 TTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTG 12378879 Query 34968 ACAAAGATCTGCATATT 34984 || ||||||||||| || Sbjct 12378880 ACGAAGATCTGCATTTT 12378896 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 12378475 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 12378534 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| || ||| Sbjct 12378535 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTC 12378594 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || ||||| || Sbjct 12378595 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACG 12378654 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 12378655 AAGATCTGCAT 12378665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624496157928