Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq108 104 4e-17 >seq108 Length=148376 Score = 104 bits (114), Expect = 4e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||||||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 54036 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 54095 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 54096 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 54155 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 54156 TGCCAGTCTC 54165 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||||||||| || |||||||| || || || || || Sbjct 55258 CTGGTTGGTTTCCACTCTCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAACAGGTC 55317 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||| || || |||| ||| ||| |||| |||||||| ||||| Sbjct 55318 CCTGGCTCGCTGCTCTTCTTTCCCCGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 55377 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 55378 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 55421 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||| ||||| | ||| | ||| ||| | || ||||| Sbjct 49381 CACCTGGAACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 49440 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| ||||||||||| | | ||||| Sbjct 49441 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGCAG 49500 Query 221242 ACTGTT 221247 ||||| Sbjct 49501 GCTGTT 49506 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 |||||| ||| |||||||||||| ||||| || |||||| | || ||||||| Sbjct 51594 CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCT 51653 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||| | |||| | ||| |||||||||| ||||| || ||||| ||||| Sbjct 51654 CTCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGAT 51713 Query 221539 GGGCCTGTGTCTCCTGTTGGA 221559 ||||| ||| | || |||||| Sbjct 51714 GGGCCGGTGCCGCCGGTTGGA 51734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928818084101440