Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq30 215 6e-51 seq2 129 7e-25 >seq30 Length=68733010 Score = 215 bits (238), Expect = 6e-51 Identities = 655/1004 (65%), Gaps = 10/1004 (1%) Strand=Plus/Minus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| |||| || || || ||| || Sbjct 55856868 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACA 55856809 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || || | ||||| ||| |||| ||||||| || |||| Sbjct 55856808 TCAGTGTCAAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 55856752 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 55856751 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCA 55856692 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| |||| ||||| || ||||||||||| | || | |||| Sbjct 55856691 CCTTTGGACACATCACCTTCAAAGTATTGCCATTTGACAAACCTGGCCAGGGCATTCATG 55856632 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || |||||| |||| || | || | || || || || || | || || | | Sbjct 55856631 TCAGAAACGTCGTACTTGT-CA-CTGGAAGAAAAAGCGCCTGGGACTTCAGGGATTCTTT 55856574 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||| | Sbjct 55856573 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAATT 55856514 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| || || | || | ||| | || ||||| || | Sbjct 55856513 TAAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAACTCCTGCTAACTACAAAATAGG 55856454 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | || | | ||| || | |||||| |||||||| Sbjct 55856453 CACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATCCCGGTGTTCT 55856394 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | | | | | || | ||||||||||| || || | |||| Sbjct 55856393 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAACAGGCA 55856334 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 55856333 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCTACTATTTCCT 55856274 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 ||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | | Sbjct 55856273 TGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAAC 55856214 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | ||| || || ||||||||||||| || |||||||| | |||||| ||||| | Sbjct 55856213 TTCTTCTGTGGAGATCTTTCATGCAATTAATGTCGGCCTGCACTCTGCTCCATGAAGCAT 55856154 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || |||||| | |||| | |||||| ||||| |||||||| || |||||| Sbjct 55856153 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACACGAGACTATTCCCT 55856094 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | ||| || | ||| Sbjct 55856093 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTC 55856035 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || || ||||| | || || | || || | |||||| || || |||| | ||| Sbjct 55856034 TGTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACT 55855975 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 || ||||| || || ||||| || | ||||| ||| || | | | | ||| || Sbjct 55855974 ATTGAGTAAGCAATTGGAAATTCTGCTTCCTCATTACTGAGAGGTTCCATAATGTATTTC 55855915 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || | |||| || |||||||| ||||| Sbjct 55855914 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 55855871 >seq2 Length=21077231 Score = 129 bits (142), Expect = 7e-25 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| || || || ||||| || ||||| |||| || || |||||| | Sbjct 2174003 TGTGGCGCAGGTGCTCCTCGAGACACTGCACGGCCGCATCGTCCACCTCGGGGTCGAACT 2173944 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || | |||||||| ||| | || |||||| ||||||| || |||| | | Sbjct 2173943 TGTTGGCCAGGAGATGGTGTT-GTT--GCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 2173887 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| |||||||| | || || || | || Sbjct 2173886 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGATGT 2173827 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 2173826 CCCCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGA 2173767 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | || | | ||||| || | || || ||||| ||||| || | ||||||||||| | Sbjct 2173766 ACTTATCGCTGAGGGGCGCGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 2173707 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 || ||||| |||||||| |||||||| ||||| || | ||||| Sbjct 2173706 CGTACTCGTCAGGGCTGTAGGTGTCCTTGGACCACTCGAGGAACT 2173662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577202597732760