Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 161 1e-33 seq108 125 9e-23 seq16 113 6e-19 seq137 104 3e-16 seq59 104 3e-16 seq22 98.7 1e-14 >seq11 Length=69873230 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 34183106 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 34183165 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 34183166 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 34183225 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | || ||||||||| |||||||| Sbjct 34183226 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCTTTAGACGAGATGCCCGTGTCGGGGT 34183285 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 34183286 GCACCTGCTTCAGCACCTTGTA 34183307 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||||||||| ||||| || | || Sbjct 13493893 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCGGTCTGAATCTCCCGGGACGTGA 13493952 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| ||| || | ||||| || | | Sbjct 13493953 TGGTGGAACGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCCCCAGCAATGCGCTCAAAGA 13494012 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 13494013 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGGT 13494072 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 13494073 GGACCTGCTTCAGCACCTTGTAGA 13494096 Score = 120 bits (132), Expect = 4e-21 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||||||||| || |||||| ||||||| |||| Sbjct 34198169 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAA 34198110 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 ||||||||||| || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 34198109 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 34198050 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||||||||| Sbjct 34198049 GTGCACCTGCTTCAGCACCTTGTA 34198026 >seq108 Length=148376 Score = 125 bits (138), Expect = 9e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 54062 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 54121 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| |||||| |||| | | ||| | Sbjct 54122 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 54181 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 54182 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 54230 Score = 100 bits (110), Expect = 3e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||| ||||| ||||| |||||| | ||||||||||| |||| |||||||||| | | Sbjct 51602 CGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCGAAGG 51661 Query 1627847 GCAGGTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGT 1627906 | | ||| | | || ||||||| |||||||||||||||| ||| || ||||||| Sbjct 51662 GGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCGGT 51721 Query 1627907 GGCGCAGGTTCGAGTGGCGGGCCTCGGG 1627934 | ||| |||| ||| | ||||| ||| Sbjct 51722 GCCGCCGGTTGGAGCGCTCGGCCTGGGG 51749 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||||| ||| ||||| || || |||||||||||||| || ||||| || || ||||||| Sbjct 56439 CGGCAAGGCCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 56498 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 |||||||||| || ||| |||||||| || || ||||| Sbjct 56499 AGATGCCCTCAATGCTGTCATCCTTCATGCACAGCAGGAAGCA 56541 >seq16 Length=7033470 Score = 113 bits (124), Expect = 6e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| || |||||||| || || ||| | |||| |||||||||||| || || Sbjct 6052024 CTGGTAATCCGTGCCGCGGACGAATCTGAGCTTGTCCAGGGGCACGCCGATGCTCTCCAG 6052083 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 ||||||||||||| | |||||| |||| ||| | || | ||| |||||||| | Sbjct 6052084 CATGGCCTTGATGACGTGCTCGTAGTAGCGCGTCCGCAGCTCCAGCAGCTCCCACGGAGC 6052143 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533 ||| |||||| |||| |||||||| |||||| |||||||| Sbjct 6052144 CTTCATGTTGTCCAGGTAGGCGTGCAGGTCGGCGAAGAGGAT 6052185 >seq137 Length=132244 Score = 104 bits (114), Expect = 3e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 92676 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACTTGGCCGGCCTCACGCCCACCGAGTTC 92735 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || ||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 92736 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCGAG 92795 Query 509156 ACGGG 509160 || || Sbjct 92796 ACCGG 92800 Score = 96.9 bits (106), Expect = 4e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | ||||| ||||||||| || | || ||||| ||||||||| ||||| | | Sbjct 85116 AGCGGCTGAAGGGGAAGGAGGGTCGGGTTCGGGGCAACCTCATGGGCAAACGCGTGGATT 85175 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | |||| ||| ||||||||| ||||||||| | | | ||| ||| |||||||||||| Sbjct 85176 TCTCCGCTCGCACCGTCATCACGCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTGC 85235 Query 507225 C 507225 | Sbjct 85236 C 85236 Score = 86.0 bits (94), Expect = 8e-11 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 507735 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTC 507786 ||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 88727 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACCTGCCGCAGTC 88778 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 100268 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 100327 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || || || || ||||| |||| || |||||| |||||||| Sbjct 100328 CATGACCTCGCGGGGCCACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 100379 >seq59 Length=287859 Score = 104 bits (114), Expect = 3e-16 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 |||||||||| || ||| ||| | |||||||||||| | ||| | |||||| ||| | Sbjct 104177 GCCTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGCCTGCACCTCGCGGCTGCTCA 104118 Query 1254403 TCGTGTTGCGCTTGTTCG-AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 |||| ||| | || | |||||||| || |||||| | | | || || | | Sbjct 104117 GCGTGGCGCGGC-GCCCGTACTGCGCCAGGCGCGAGGCCTCCGCCGCCAGCCGCTCCAGC 104059 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| ||||| |||||||||| ||| | |||| ||||||| | | ||||||| Sbjct 104058 ATGTCGTTCACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGGCGAGGTCGGGG 103999 Query 1254522 TGCACCTGC 1254530 ||||||||| Sbjct 103998 TGCACCTGC 103990 >seq22 Length=110987800 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 97726667 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 97726608 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| |||||| ||||| || |||| ||| || || Sbjct 97726607 GTACTGGATGGGGAAGATGACGAAGCGGCGCGGGTTCTCCCGCAGCAGCGGCTC 97726554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106950369164417