Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 219 7e-51 seq59 170 3e-36 seq108 111 2e-18 seq16 109 9e-18 seq22 105 1e-16 seq137 100 5e-15 >seq11 Length=69873230 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 34183067 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 34183126 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 34183127 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 34183186 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 34183187 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 34183246 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 34183247 TGATGCTCATGGCTTTAGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 34183306 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 34183307 ACACGTAGATCGAGTA 34183322 Score = 187 bits (206), Expect = 4e-41 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||| |||||| ||||||| || || ||| Sbjct 13493854 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACCGCGTGCTTGGCCAGCTCCCCAGGCA 13493913 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||| ||||| |||| ||| ||| |||||||| Sbjct 13493914 GCAGCAGGCGCACGGCGGTCTGAATCTCCCGGGACGTGATGGTGGAACGCTTGTTGTAAT 13493973 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||| ||||| || ||||||| Sbjct 13493974 GGGCCAGGCGGGAGGCTTCCCCAGCAATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 13494033 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| ||||| |||||||| |||||||||| Sbjct 13494034 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 13494093 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 13494094 AGACATAGATGGAGTA 13494109 Score = 120 bits (132), Expect = 5e-21 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1485567 GATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGAT 1485626 ||| ||| ||||||||| | |||||||||| |||||| ||||||| |||| Sbjct 34198169 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAA 34198110 Query 1485627 CATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 ||||||||||| || ||||||||||| ||| | ||| ||||||||| |||||| Sbjct 34198109 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 34198050 Query 1485687 GTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||||||||| ||||||||||| || || |||||| Sbjct 34198049 GTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 34198011 >seq59 Length=287859 Score = 170 bits (188), Expect = 3e-36 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||||||||||| || ||| ||| Sbjct 104216 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCCTGGCCAGCTCCCCGGGCA 104157 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| | ||| | ||||||| ||| | |||| ||| | || | Sbjct 104156 GCAGCAGGCGCACGGCCGCCTGCACCTCGCGGCTGCTCAGCGTGGCGCG-GCGCCCGTAC 104098 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||||||||| |||||| | | | || || | ||||||||| ||||| |||||| Sbjct 104097 TGCGCCAGGCGCGAGGCCTCCGCCGCCAGCCGCTCCAGCATGTCGTTCACAAAGGAGTTC 104038 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||| | | |||||||||||||||| Sbjct 104037 ATGATGCTCATGGCCTTGGAGGAGATGGCGAGGTCGGGGTGCACCTGC 103990 >seq108 Length=148376 Score = 111 bits (122), Expect = 2e-18 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 ||| | | |||||| ||||| |||||| ||| |||||||||| |||| |||||||||| Sbjct 51598 GCCCCGTAGTAGATGGTCTCGAAGATG-TGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTC 51656 Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170 | || | ||| | | || ||||||||||||||||||||||||| ||| || || Sbjct 51657 GAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 51716 Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGG 2070203 |||||| ||| |||| ||| || ||||| ||| Sbjct 51717 CCGGTGCCGCCGGTTGGAGCGCTCGGCCTGGGG 51749 Score = 105 bits (116), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 54062 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 54121 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || |||||| |||| | | || | Sbjct 54122 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 54181 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 54182 ATGGCGTACCA 54192 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCG 2069676 || || |||||||| || | ||| |||||||||||||| ||| | |||| | |||| Sbjct 49388 AACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCG 49447 Query 2069677 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 |||||||||||||||| | || | ||||||||||||| | | | |||||| Sbjct 49448 TTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGCAG 49500 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||||| ||| ||||| || || | |||||||||||| || |||| ||||| || |||| Sbjct 56439 CGGCAAGGCCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 56498 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 |||||||||| || ||| |||||||| || ||| ||||| Sbjct 56499 AGATGCCCTCAATGCTGTCATCCTTCATGCACAGCAGGAAGCA 56541 >seq16 Length=7033470 Score = 109 bits (120), Expect = 9e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 |||||||||| ||||||| || ||| ||| ||||| || ||||| ||| || | Sbjct 6052023 GCTGGTAATCCGTGCCGCGGACGAATCTGAGCTTGTCCAGGGGCACGCCGATGCTCTCCA 6052082 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 |||||||||||||| | |||||| |||| ||| |||| | || |||||||| | Sbjct 6052083 GCATGGCCTTGATGACGTGCTCGTAGTAGCGCGTCCGCAGCTCCAGCAGCTCCCACGGAG 6052142 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 ||| ||||| |||| |||||||| |||||| |||||||| ||||| Sbjct 6052143 CCTTCATGTTGTCCAGGTAGGCGTGCAGGTCGGCGAAGAGGATTGTCACC 6052192 >seq22 Length=110987800 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 97726666 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 97726607 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| |||||||| || ||||||||||| Sbjct 97726606 TACTGGATGGGGAAGATGACGAAGCGGCGCGGGTTCTCCCGCAGCAGCGGCTC 97726554 >seq137 Length=132244 Score = 100 bits (110), Expect = 5e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 92676 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACTTGGCCGGCCTCACGCCCACCGAGTTC 92735 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 92736 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCGAG 92795 Query 431142 ACGGG 431146 || || Sbjct 92796 ACCGG 92800 Score = 87.8 bits (96), Expect = 3e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | ||||| |||||||| ||| | || ||||| ||||||||| ||||| | | Sbjct 85116 AGCGGCTGAAGGGGAAGGAGGGTCGGGTTCGGGGCAACCTCATGGGCAAACGCGTGGATT 85175 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | | || ||| ||||||||| ||||||||| | | | ||| ||| |||||||||||| Sbjct 85176 TCTCCGCTCGCACCGTCATCACGCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTGC 85235 Query 429181 C 429181 | Sbjct 85236 C 85236 Score = 87.8 bits (96), Expect = 3e-11 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 429664 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCG 429716 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 88727 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACCTGCCGCAGTCG 88779 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 100268 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 100327 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| || || ||| || ||||| |||| ||||||||| ||||||| Sbjct 100328 CATGACCTCGCGGGGCCACCTGATGGCCATCACCCGGCACGGCGTCAACCG 100378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916001632135139