Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq10 82.4 6e-11 seq7 82.4 6e-11 >seq10 Length=11116859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | ||| ||| | | Sbjct 3464961 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3464902 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||| |||||| | ||| || ||| Sbjct 3464901 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3464842 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||||| || || | ||||||||| Sbjct 3464841 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAAC 3464782 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| || || ||||| ||||| || Sbjct 3464781 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTG 3464749 >seq7 Length=14042894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || ||||| || | |||||||| ||||| ||| | || ||| | Sbjct 12378896 AAAATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCC 12378837 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || | | | || || ||||| || || |||||| | ||| || Sbjct 12378836 AGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGAC 12378777 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || ||||||||||| | | || | | |||||| Sbjct 12378776 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTAC 12378717 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || ||||| ||||| |||| | ||| || | || |||| || Sbjct 12378716 AACATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGAGAGGTGG 12378667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398865614123389