Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10 109 4e-19 seq7 104 2e-17 >seq10 Length=11116859 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||||||| || || |||||||| || || ||||||||||| | Sbjct 3465524 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGAC 3465583 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || || || ||| | |||| || ||||| || || ||| Sbjct 3465584 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 3465643 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | |||||| | || || Sbjct 3465644 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 3465703 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||| | ||| || ||||| |||||||| || Sbjct 3465704 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTT 3465753 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||| || || |||||||| || || ||||||||||| | Sbjct 3464186 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGAC 3464245 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| || ||||| || || ||| Sbjct 3464246 AGGGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3464305 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || |||||| | || | |||||| | || || Sbjct 3464306 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 3464365 Query 29740 TCAAGAGTTATAGTTTTGCC 29759 || || || || || ||||| Sbjct 3464366 TCGAGGGTGATGGTCTTGCC 3464385 >seq7 Length=14042894 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||||| | ||| || || ||||| || || ||||| || || | Sbjct 12378667 CCACCTCTCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12378726 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || ||||| || || || Sbjct 12378727 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 12378786 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || |||||| | || | ||||| | || || Sbjct 12378787 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 12378846 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | ||| || || || ||||||||||| Sbjct 12378847 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATTTT 12378896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208397129441