Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 158 2e-33 seq7 150 4e-31 seq22 114 3e-20 >seq10 Length=11116859 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | |||||| || ||||| ||||| || ||||||||||| Sbjct 3465524 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGAC 3465583 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || |||||||| || || || || || ||||| Sbjct 3465584 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 3465643 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || ||||| || ||| | || || || Sbjct 3465644 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 3465703 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 3465704 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3465750 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || ||||| ||||| || || || || || || | | ||| Sbjct 3464747 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCG 3464806 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || || || || ||||| || || ||||||||| Sbjct 3464807 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTA 3464866 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || ||| | || || ||||||| || || Sbjct 3464867 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 3464926 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| |||||||| Sbjct 3464927 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | ||||||||| || |||||||| || || || || || Sbjct 3464507 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3464566 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || |||||||| || || || || || ||||| Sbjct 3464567 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 3464626 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || ||||| || ||| | || || || Sbjct 3464627 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 3464686 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 3464687 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3464733 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | |||||| || ||||| ||||| || || || || || Sbjct 3465191 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3465250 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || |||||||| || || || || ||||| || Sbjct 3465251 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3465310 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| ||||| || ||| | || || || Sbjct 3465311 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 3465370 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 || | || || |||||||| |||| ||||| Sbjct 3465371 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTT 3465402 Score = 132 bits (146), Expect = 9e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || ||||| ||||| || ||||||||||| || | | || Sbjct 3464198 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGGCCA 3464257 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || || || || ||||| || || ||||||||| Sbjct 3464258 TCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTA 3464317 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || ||| | || || || || | || || Sbjct 3464318 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 3464377 Query 82776 GTCTTGCC 82783 |||||||| Sbjct 3464378 GTCTTGCC 3464385 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || ||||||||||| || ||||| || || ||||| ||||| || ||| | || || Sbjct 3465413 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 3465472 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 3465473 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3465522 >seq7 Length=14042894 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | ||||| |||||||| ||||| || || || ||||| Sbjct 12378667 CCACCTCTCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12378726 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||||||||| || || || || ||||| || Sbjct 12378727 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 12378786 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 12378787 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 12378846 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || || ||||||||||||| ||||| || || ||||||||| || Sbjct 12378847 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATTTTT 12378897 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || | ||||||||| || |||||||| || || || |||| Sbjct 12378437 TACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAG 12378496 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || ||||||||||| || || || || || |||| Sbjct 12378497 ACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 12378556 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || ||||| || || || || ||||| || ||| | || || | Sbjct 12378557 GGATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGA 12378616 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||||||||||| ||||| || || |||||||| Sbjct 12378617 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 >seq22 Length=110987800 Score = 114 bits (126), Expect = 3e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | || ||||| || ||||| || ||||| || || ||||| Sbjct 73793407 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 73793348 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 73793347 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTCCATGTCTATCACCATTTCACCATGTTC 73793288 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 73793287 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 73793245 Score = 100 bits (110), Expect = 6e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| |||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 73791015 AGCTTTTTTCGGAGCTCAAATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGG 73790956 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 |||| || ||||| |||| ||| | || || | |||||||| || ||| | || || Sbjct 73790955 ATTGGCAGCTTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATATTTGACCAT 73790896 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 73790895 ATTGCAATTGGTA 73790883 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 73790392 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 73790333 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| |||| || || || || |||||||||||| Sbjct 73790332 AAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGGTAAC 73790273 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 73790272 TTCTACTATCGGACATATAAG 73790252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981798254200039