Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10 149 6e-31 seq7 138 1e-27 seq108 96.9 3e-15 >seq10 Length=11116859 Score = 149 bits (164), Expect = 6e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| ||| || ||| | |||||| |||||||| || Sbjct 3464537 GTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCT 3464596 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 3464597 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3464656 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| |||||||||| |||| ||||| ||| ||||| ||||| || Sbjct 3464657 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3464716 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3464717 TTCACGAAGATCTGCAT 3464733 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || | ||| | |||||| |||||||| || Sbjct 3464992 GGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCCTCCAGCTGCTTCCC 3465051 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| |||||||| ||||||||||| |||||| ||| Sbjct 3465052 TGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTT 3465111 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| |||| ||||| ||| ||||| ||||| || Sbjct 3465112 GACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 3465171 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3465172 CTTCACGAAGATCTGCAT 3465189 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| ||| || ||| | |||||| ||||||||||| Sbjct 3464764 GGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCC 3464823 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 3464824 AGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 3464883 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3464884 GACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGT 3464943 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 3464944 CTTGACAAAGATCTGCAT 3464961 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || || ||||| || ||| | |||||| |||||||| || Sbjct 3465553 GGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCC 3465612 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 3465613 TGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 3465672 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3465673 CACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 3465732 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 3465733 CTTGACAAAGATCTGCATG 3465751 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| ||| || ||| | |||||| |||||||| || Sbjct 3465220 GGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCC 3465279 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 3465280 TGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 3465339 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| |||| ||||| ||| ||||| ||||| || Sbjct 3465340 GACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 3465399 Query 133643 TTT 133645 || Sbjct 3465400 CTT 3465402 Score = 105 bits (116), Expect = 6e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || || ||||| || ||| | | | || || |||||||| | Sbjct 3464215 GGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTCC 3464273 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || ||||||||||| || |||||| || Sbjct 3464274 CTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 3464333 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| ||||| |||||||||| |||| ||||| ||| ||||| Sbjct 3464334 TGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCC 3464385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 133551 GGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCC 133610 || ||||||||||| || |||||| ||||| | ||||| ||||| |||||||| Sbjct 3464396 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 3464455 Query 133611 ACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||| ||||| ||| ||||| ||||| || || ||||| ||||||||| Sbjct 3464456 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 3464506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 133551 GGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCC 133610 || ||||||||||| || |||||| ||||| | ||||| ||||| |||||||| Sbjct 3465413 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 3465472 Query 133611 ACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||| ||||| ||| ||||| ||||| || || || || ||||||||| Sbjct 3465473 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 3465523 >seq7 Length=14042894 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || ||| | | | ||||| ||||||||||| Sbjct 12378469 GTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 12378527 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| |||||||||||||| ||||| |||||| ||| Sbjct 12378528 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTT 12378587 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 12378588 CACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGT 12378647 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 12378648 CTTGACGAAGATCTGCAT 12378665 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| || | ||| | | | ||||| |||| Sbjct 12378690 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCCTCCAGCT 12378748 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || ||||||||||||||||| ||||| Sbjct 12378749 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCT 12378808 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| ||||||| || || | ||||| ||| ||||| | Sbjct 12378809 TGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTG 12378868 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 12378869 TCAGGGTCTTGACGAAGATCTGCAT 12378893 >seq108 Length=148376 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||| ||| | | || || || ||| || ||||| |||||||| ||||| || || Sbjct 51540 GCCCTGGTAGGTGTCATAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTCCAGGGC 51599 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 |||||||| || |||||| || ||| |||||| || |||| |||| ||| | Sbjct 51600 CCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCGAA 51659 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | |||| | | || |||||||| |||||||| ||||| | ||| |||||||| Sbjct 51660 GGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCG 51719 Query 148679 GTG 148681 ||| Sbjct 51720 GTG 51722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406895609240