Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 seq30 138 1e-27 >seq2 Length=21077231 Score = 149 bits (164), Expect = 7e-31 Identities = 244/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 ||||||||||| |||||||| | ||| ||||||||||||||| || || | || Sbjct 2173437 CGCACCATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAG 2173378 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||| ||| | || | | ||| ||||| | ||||| || |||||||| || || Sbjct 2173377 CGCCACGGCACGGGGC-TCTGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCACCCG 2173319 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| || ||||| || ||||| |||| | |||| || ||||||||| ||| || Sbjct 2173318 CGACCAGGAGGCGTAGACCACGCTTTCCAGGCGGCTGGCCACGAAGACATTGGGGAAGCA 2173259 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | || || |||||||| ||| | | || ||||| || ||||| || Sbjct 2173258 GGCGGCAATGGCCCTCACGGCCTCCTGGAAGGCGGCCGGG--GCTTTGCTGTCTACATGG 2173201 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| |||||||| |||||||||| || || ||| | | ||| ||||| || || Sbjct 2173200 ACGCAGTAGAGATTCTGGGGGGCGTAGACGGACCGCAGGAGCCGCTCAAACATGTCGATT 2173141 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| | | || || || || ||||||||||| ||||||| Sbjct 2173140 TTGTGGTGGATGATCATGGAGTAGGCGATGGGGAACTCCTCCTCCTC 2173094 >seq30 Length=68733010 Score = 138 bits (152), Expect = 1e-27 Identities = 531/827 (64%), Gaps = 24/827 (3%) Strand=Plus/Minus Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || | ||| || || ||||| || || || | || || | Sbjct 55856746 TCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTT 55856687 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | |||||| || || |||||||||| || || ||||| | | || | |||||| || Sbjct 55856686 GGACACATCACCTTCAAAGTATTGCCATTTGACAAACCTGGCCAGGGCATTCATGTCAGA 55856627 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||||||||| |||| || | | || || || || | || | ||| || | | Sbjct 55856626 AACGTCGTACTTGT-CACTGGAAGAAAAAGCGCCTGGGACTTCAGGGATTCTTTGAATTG 55856568 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATG-----AACTC 162413 | |||||||||| || ||||| || || || || |||| |||||| ||| || | Sbjct 55856567 TTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAATTTAAGTA 55856508 Query 162414 CCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGC 162473 | | ||||| | ||| | | | || | || |||| | || | ||| || || Sbjct 55856507 TTTTGCTGTTTTCTAGTACATATTCTACAAAAC-----TCCTGCTAACTACAAAATAGGC 55856453 Query 162474 GCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGAC 162533 || |||||||| || || | | | ||| || | | ||||||| || ||||| Sbjct 55856452 ACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATCCCGGTGTTCTT 55856393 Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 || | || || | | | | || ||| ||||||| ||| | || || | Sbjct 55856392 TATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCT----TACTTCTTTATAAACAG 55856337 Query 162594 G----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCT 162649 | | ||| || || | ||||| |||| | || || | | || || | Sbjct 55856336 GCATTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCTACTATTT 55856277 Query 162650 CTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAA 162709 | |||||||| | |||||||| | || || || || || | |||||||| || Sbjct 55856276 CCTTGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTG 55856217 Query 162710 CGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 || || || ||||| | | || || | |||||||| || | ||||| || | Sbjct 55856216 AACTTCTTCTGTGGAGATCTTTCATGCAATTAATGTCGGCCTGCACTCTGCTCCATGAAG 55856157 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 | || || || ||||| ||| ||| | ||||||||| || |||||||| ||||| | Sbjct 55856156 CATATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACACGAGACTATTC 55856097 Query 162830 CCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAG 162887 || |||| | ||| | || || | |||| | ||||| || | |||||| | Sbjct 55856096 CCTTCACAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGAATGCAGTAAAA 55856039 Query 162888 ATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTAC 162947 |||||| || || ||||| | || || | ||| || | |||||| || || || | || Sbjct 55856038 ATTCTGTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAAC 55855979 Query 162948 CACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 ||| || || || || || || || || || ||||| |||||||| Sbjct 55855978 CACTATTGAGTAAGCAATTGGAAATTCTGCTTCCTCATTACTGAGAG 55855932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578415362849600