Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 4e-12 >seq7 Length=14042894 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || || ||||| | || || || |||| Sbjct 12378662 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGAC 12378603 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| || || ||| || Sbjct 12378602 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAG 12378543 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||| ||||| | || || | || |||||| || Sbjct 12378542 AGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAACATC 12378483 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| |||||||| Sbjct 12378482 CAGAAAGAGTCAACTCTGCACCTTGT 12378457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181785958076221