Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 179 5e-39 seq59 127 3e-23 seq108 125 1e-22 seq22 107 3e-17 seq137 96.9 5e-14 >seq11 Length=69873230 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || || ||||| Sbjct 34183307 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCTAAAGCCATG 34183254 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| |||||| ||| Sbjct 34183253 AGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 34183194 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||| Sbjct 34183193 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGC 34183134 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 34183133 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 34183085 Score = 140 bits (154), Expect = 5e-27 Identities = 178/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| ||||| || || |||| Sbjct 13494109 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCTGACAC-----GGGCATC- 13494056 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||| | Sbjct 13494055 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATTGCT 13493996 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | ||||||||| ||| ||| | || ||||| Sbjct 13493995 GGGGAAGCCTCCCGCCTGGCCCATTACAACAAGCGTTCCACCATCACGTCCCGGGAGATT 13493936 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||||||||||||| | ||| || || ||||||| |||||| ||||| |||||| Sbjct 13493935 CAGACCGCCGTGCGCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCGGTCTCAGAGGGC 13493876 Query 725139 ACCA 725142 |||| Sbjct 13493875 ACCA 13493872 Score = 105 bits (116), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 34198026 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 34198079 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| |||||| ||| Sbjct 34198080 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 34198139 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063 ||||||| || |||||||||| ||| ||| Sbjct 34198140 CTGGCGCACTACAACAAGCGCTCCACCATC 34198169 >seq59 Length=287859 Score = 127 bits (140), Expect = 3e-23 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 ||||||||||||| ||| |||||| ||| |||| ||||| ||||||||||| Sbjct 103990 GCAGGTGCACCCCG--ACCTC---GCCATC-TCCTCCAAGGCCATGAGCATCATGAACTC 104043 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 ||||| ||||||||| | || || | | | |||||| |||||||||| | | Sbjct 104044 CTTTGTGAACGACATGCTGGAGCGGCTGGCGGCGGAGGCCTCGCGCCTGGCGCAGTACGG 104103 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 ||| |||| | ||| |||||| | ||| | |||||||||||| | ||| ||| Sbjct 104104 GCGCCGCGCCACGCTGAGCAGCCGCGAGGTGCAGGCGGCCGTGCGCCTGCTGCTGCCCGG 104163 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||||||||||||||||||||||||||| Sbjct 104164 GGAGCTGGCCAGGCACGCCGTCTCCGAGGGCACCA 104198 >seq108 Length=148376 Score = 125 bits (138), Expect = 1e-22 Identities = 112/138 (81%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | |||||| ||||| ||||||||| ||||| Sbjct 54198 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACTGGCACCCCCTACATGCTCTAC 54139 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 54138 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 54080 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 54079 CCTGTGCACCGAGATCGT 54062 Score = 89.7 bits (98), Expect = 7e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| | | | ||||||||||||| | || | |||||||||||||||| |||| | Sbjct 49499 TGCTCATTTCCCCCATGCCCACGGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTCCA 49440 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 ||||| | ||| |||||||||||||| ||| | || |||||||| || || Sbjct 49439 TCGAGCCCTACACCAGCAACATCTACACACGCAGGGTCCTCTCGGGGGAGTT 49388 >seq22 Length=110987800 Score = 107 bits (118), Expect = 3e-17 Identities = 93/114 (82%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || |||||| |||||| ||| | |||||||||| ||||| Sbjct 97726554 GAGCCGCTGCTGCGGGAGAACCCGCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 97726613 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 97726614 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 97726666 >seq137 Length=132244 Score = 96.9 bits (106), Expect = 5e-14 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 |||| ||||||||||||||||||| ||||||||||||||||| || ||| || || | Sbjct 92793 CGGCCGTCTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGA 92734 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 |||| | |||||||| | ||| ||||| ||| ||||||||||||||||| Sbjct 92733 ACTCGGTGGGCGTGAGGCCGGCCAAGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGG 92676 Score = 93.3 bits (102), Expect = 6e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1818123 GGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTA 1818182 ||||||||||||| ||| ||| | | | ||||||||| ||||||||| ||| |||| Sbjct 85236 GGCACGCCCACCTGGTCGATGGCCAGGTTGGGGTCGGGCGTGATGACGGTGCGAGCGGAG 85177 Query 1818183 AAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGC 1818242 || | ||||| ||||||||| ||||| || | || |||||||| ||||| | |||| Sbjct 85176 AAATCCACGCGTTTGCCCATGAGGTTGCCCCGAACCCGACCCTCCTTCCCCTTCAGCCGC 85117 Query 1818243 T 1818243 | Sbjct 85116 T 85116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177589264320762