Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10 125 6e-24 seq7 104 2e-17 >seq10 Length=11116859 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| ||| |||| ||||||||||| || ||||| Sbjct 3464542 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAA 3464601 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||| ||| |||||| ||||| | Sbjct 3464602 GATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 3464661 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 3464662 CTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 3464721 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 3464722 GAAGATCTGCAT 3464733 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| ||||| | || ||| ||| |||| ||||||||||| || ||||| Sbjct 3465560 TCCTTCTGGATGTTATAATCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAG 3465619 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||||| || ||||||||| |||||| ||||| | Sbjct 3465620 ATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 3465679 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || || ||| Sbjct 3465680 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 3465739 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3465740 AAGATCTGCAT 3465750 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| ||| |||| ||||||||||| || || || Sbjct 3464771 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAG 3464830 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||| ||| |||||| ||| | | | Sbjct 3464831 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 3464890 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || |||| ||||| || || || |||| || || ||| Sbjct 3464891 TCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 3464950 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3464951 AAGATCTGCAT 3464961 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| ||| |||| ||||||||||| || ||||| Sbjct 3464999 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAG 3465058 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||| | | ||||||||| |||||| ||| | | | Sbjct 3465059 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 3465118 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 3465119 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 3465178 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3465179 AAGATCTGCAT 3465189 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| ||| |||| ||||||||||| || ||||| Sbjct 3465227 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAG 3465286 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||| ||| |||||| ||| | | | Sbjct 3465287 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 3465346 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | ||||| || | |||||||| | ||||| || || || |||| Sbjct 3465347 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCA 3465395 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| ||||| | || ||| || | || ||||||||||| || ||||| Sbjct 3464222 TCCTTCTGGATGTTATAATCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAG 3464281 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||| ||| |||||| ||| | | | Sbjct 3464282 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 3464341 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACC 35709 | | ||||| || | |||||||| | ||||| || || || Sbjct 3464342 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCC 3464385 >seq7 Length=14042894 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 12378703 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 12378762 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 12378763 ATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 12378822 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||| | ||||| || || || |||| || || || Sbjct 12378823 TCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACG 12378882 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 12378883 AAGATCTGCATT 12378894 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 12378474 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 12378533 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || || |||||| |||||| ||||| | Sbjct 12378534 GATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTT 12378593 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 12378594 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGAC 12378653 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 12378654 GAAGATCTGCAT 12378665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450780634049080