Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq27 116 5e-21 >seq27 Length=49693984 Score = 116 bits (128), Expect = 5e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| || |||| ||| | ||||| || || || ||| | | | | ||| | Sbjct 22294475 CAGATGATCAACGGAGAAATGTACCCGCCGACGGTGCGGGACACGCAGGCAGAGATGCTG 22294534 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| ||| ||| ||||| | | || ||| | |||| | ||| |||| || || Sbjct 22294535 TACCCGCCCCACGTGCCCGAGCACCTGCGGTTCTCCGTGGGGCAGGAGGTGTTCGGGCTG 22294594 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| || | ||| ||||||||| ||||||||| | ||||||||| | || |||||| Sbjct 22294595 GTGCCGGGGCTGATGATGTACGCCACCATCTGGCTGCGCGAGCACAACCGCGTCTGCGAC 22294654 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| || || ||||||| || ||| ||||||| ||||| ||||||| Sbjct 22294655 GTGCTCAAGCACCAGCACCCCGAGTGGGACGACGAGCAGCTCTTCCAGA 22294703 Score = 116 bits (128), Expect = 5e-21 Identities = 199/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || || || ||| | || || ||| Sbjct 22296371 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATTGATGCCATGGAGCTGTAC 22296430 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 22296431 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 22296490 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||||||||| |||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 22296491 ATGGGGGCTCCCTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCTGAGTAC 22296550 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | ||| ||||||| | | || |||| Sbjct 22296551 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCCCTG 22296610 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||||||||| ||||| || | || |||| Sbjct 22296611 CAGAAGCTCATCTGCAACAACGTCAAGGGCTGTCCCTTCACTGCCTTCC 22296659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723319994910240