Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12 122 7e-23 seq22 109 4e-19 >seq12 Length=147836772 Score = 122 bits (134), Expect = 7e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 46348898 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 46348839 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 |||| ||| | ||||| || || || |||||||||||||| || || ||||| || || | Sbjct 46348838 CATGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCA 46348779 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | ||||||||||| |||||||| || || || Sbjct 46348778 GCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 46348742 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 || || || | |||| ||||||||||| ||||| |||||||| ||||||| |||||||| Sbjct 20179868 CTTTAATGCAGAAAATCCGTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAA 20179809 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGA 44598 || ||||| || || ||| ||||||||| || | | || ||| ||||| || Sbjct 20179808 TTTCTTTGAGAAGCGTGTTTCAGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGA 20179749 Query 44599 CAATAAATTTACTACGGATGAAGATTT 44625 |||| || ||| ||||| |||||| Sbjct 20179748 CAATGTCTTCACTCTGGATGCAGATTT 20179722 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || || || || ||||||||| Sbjct 20187175 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTCGCTGCTATATTTTGG 20187116 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || |||||||||| ||||| || || ||||| | || || | ||| Sbjct 20187115 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 20187056 Query 44255 GA 44256 || Sbjct 20187055 GA 20187054 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || ||| Sbjct 20190840 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 20190781 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 20190780 TACAGCTTGCTCATAGACACCTACATCAAAGAT 20190748 >seq22 Length=110987800 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 97727397 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 97727456 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| || ||| Sbjct 97727457 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 97727504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444853967505