Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq108 91.5 2e-13 seq12 82.4 1e-10 >seq108 Length=148376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| ||||| |||||||| | || || || || | |||| | ||| || || || Sbjct 54040 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 54099 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| | |||||||||||||||||||| || || Sbjct 54100 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 54159 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| ||||| || | || || || | ||| Sbjct 54160 AGTCTCGGTCTGGGACTCGATGATGGCGTACCA 54192 >seq12 Length=147836772 Score = 82.4 bits (90), Expect = 1e-10 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| | || ||||| || |||| ||||| Sbjct 20187052 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 20187111 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||| |||| | ||||| ||| || || || |||||||| || ||||| ||||| | Sbjct 20187112 TCAGCCAAAATATAGCAGCGAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20187171 Query 122798 CAA 122800 ||| Sbjct 20187172 CAA 20187174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013936229600