Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq108 96.9 4e-15 >seq108 Length=148376 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| |||||||| |||| |||||||| |||||||||||||||| ||||| | | | Sbjct 51726 GCGGCACCGGCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTCATGCG 51667 Query 20149 CCTCTCATTCGACGATC-CCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGAGGCCGTG 20206 || | ||||| || | || |||||| ||| |||||| || |||||||||| || | Sbjct 51666 GTTCCCCTTCGA-GAGCGCCGAGGCGCAGCG-CCTCAACCAGCACATCTTCGAGACCATC 51609 Query 20207 TACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACG 20266 ||| ||| |||||| || ||||| || ||| ||| | ||||| || || || Sbjct 51608 TACTACGGGGCCCTGGAGGCCAGCTGCGAGCTGGCCCGGGAGCAGGGCCCCTATGACACC 51549 Query 20267 TTCAAGGGGTCGCCCG 20282 | | |||| ||||||| Sbjct 51548 TACCAGGGCTCGCCCG 51533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19250 TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTC 19309 || ||||| ||||| || |||||||||||||||||||||||||||||||| || || Sbjct 56547 TCCAGCTGCTTCCTGCTGTGCATGAAGGATGACAGCATTGAGGGCATCTACGACACCCTG 56488 Query 19310 AAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||| |||| || | ||||||||||| | ||||| || || Sbjct 56487 AAGCAGTGTGCCCTCATCTCCAAGTCTGCTGGGGGCATTGG 56447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| ||| | ||| | ||| || ||||||| || ||||||||||||| Sbjct 54040 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 54099 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| |||| |||||||||| |||||| || || || Sbjct 54100 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 54159 Query 79200 GGTCTC 79205 ||||| Sbjct 54160 AGTCTC 54165 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/203 (71%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 78724 GGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCG 78780 ||||| |||| | | || || || | |||| |||| ||| || ||||| | ||| Sbjct 51535 GGCGAGCCCTGGTAGGTGTCATAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTC- 51593 Query 78781 AGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTGGT 78839 ||||||| ||| ||| | | |||||||||| || |||||| ||| |||||| || Sbjct 51594 --CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGG-CGCTGCGCCTCGGC 51650 Query 78840 -CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAG 78898 ||| ||||| | | | | | |||||| | |||||||||||||| |||||||| Sbjct 51651 GCTC-TCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGC 51709 Query 78899 CGATCGGTCGGTGGCGCATGTTG 78921 |||| || ||||| ||| |||| Sbjct 51710 CGATGGGCCGGTGCCGCCGGTTG 51732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509023055440