Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10 179 4e-40 seq7 172 6e-38 seq108 86.0 7e-12 >seq10 Length=11116859 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||||||| | || Sbjct 3465750 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3465691 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || |||||||| |||||| Sbjct 3465690 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 3465631 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||| | || ||||| | || ||||| Sbjct 3465630 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTATAAC 3465571 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || |||| || | ||||| Sbjct 3465570 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3465524 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || || || ||| | || Sbjct 3464961 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3464902 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 3464901 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3464842 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 3464841 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAAC 3464782 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || |||| || | ||||| Sbjct 3464781 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3464735 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | || Sbjct 3465189 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 3465130 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || || ||||| |||||| Sbjct 3465129 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 3465070 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||| | || ||||| | ||||| || Sbjct 3465069 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTCTCTGACTACAAC 3465010 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || |||| || | ||||| Sbjct 3465009 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3464963 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480 ||||| || || |||||||| || || || ||||| ||| | |||| | ||||| ||| Sbjct 3465402 AAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATTGAGAAT 3465343 Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 | ||||| || || ||||| ||||| || ||||| |||||||||||| | || || ||| Sbjct 3465342 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTT 3465283 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 || || ||||| || ||||| | || ||||| | ||||| || |||| ||||||||| Sbjct 3465282 GCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCC 3465223 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || |||| || | ||||| Sbjct 3465222 ACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3465191 Score = 136 bits (150), Expect = 5e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || || ||||| ||| | |||| | ||||| ||| | ||||| || Sbjct 3464385 GGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAG 3464326 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||| || ||||| |||||||||||| | || || ||||| || ||||| Sbjct 3464325 ATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGGAAGCAG 3464266 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| || ||||| | || ||||| |||| ||||||||||| || || || Sbjct 3464265 CTGGAAGATGGCCGCACCCTGTCTGATTATAACATCCAGAAGGAATCCACCCTGCACCTG 3464206 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || |||| || | ||||| Sbjct 3464205 GTGCTGCGCCTCAGGGGTGG 3464186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| ||| | || Sbjct 3465522 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 3465463 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || | ||||| ||| | ||||| || || ||||| ||||| || ||||| Sbjct 3465462 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCC 3465413 >seq7 Length=14042894 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | | Sbjct 12378894 AATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 12378835 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||| || || ||||||||||| || || || |||||||| Sbjct 12378834 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 12378775 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 12378774 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTACAA 12378715 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || |||| || | ||||| Sbjct 12378714 CATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGAGAGGTGG 12378667 >seq108 Length=148376 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGA 80646 || || || ||||||| | | ||||||||| || | ||||| ||||| ||| Sbjct 51550 GTGTCATAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTCCA---GGGCCCCGTAG 51606 Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706 || ||| ||| |||| | || ||| | | |||||| | | ||||| | || Sbjct 51607 TAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCGAAGGGGAAC 51666 Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766 | ||| | ||||| |||| ||||||||||| ||||||||| |||| || ||||| ||| Sbjct 51667 CGCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCGGTGCCGC 51726 Query 80767 TTGTTCGATCGCTCGGCCT 80785 ||| || |||||||||| Sbjct 51727 CGGTTGGAGCGCTCGGCCT 51745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293996447120