Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2 333 3e-86 >seq2 Length=21077231 Score = 333 bits (368), Expect = 3e-86 Identities = 682/1003 (68%), Gaps = 22/1003 (2%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||| ||| |||||| |||||| | | | || | | Sbjct 2173011 CGCCCGGCGAGTACCTGAACATTACGAGGGACTGCAGAGCCTTCAAGGAGAGCCGGCGCT 2173070 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | || ||||||| ||| |||| ||||| |||||||||||||| || | | Sbjct 2173071 ACATCGAGTTCCCGCTGAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCA 2173130 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 |||||||||| ||||| ||||| ||||| |||||| || || |||||||||| ||||| | Sbjct 2173131 TCCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAATC 2173190 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 ||||||||||||| || ||| ||| || | || ||| || ||| ||||| Sbjct 2173191 TCTACTGCGTCCATGTAGACAGCAAAGCCCCGGCCGCCTTCCAGGAGGCCGTGAGGGCCA 2173250 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 | ||| |||||||| || || | ||||| ||| ||| | |||||| |||| || Sbjct 2173251 TTGCCGCCTGCTTCCCCAATGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTACGCCT 2173310 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || |||||||||||||||| ||||||| ||||||| |||||| Sbjct 2173311 CCTGGTCGCGGGTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGC 2173370 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 |||| | ||||| ||||| ||||| | |||||||| ||||||||||| |||| Sbjct 2173371 CGTGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGA 2173430 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCC 14077 | |||||||||||| || ||| ||| ||||| || ||||| | |||| | | | Sbjct 2173431 TGGTGCGGGCGCTGCAGCTGCTGCAGGGCCAGAACACCATGGAGTCGGAGAGGCCCT--C 2173488 Query 14078 CAACCACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGG 14136 | ||||| ||| ||| ||| | | |||| |||| |||| | Sbjct 2173489 GGCCGCCAAGCAGCAGCGCTGGCAGTACCA-CCACGAGGTG------GGCGAGACCATCT 2173541 Query 14137 TCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACG 14196 | ||| | | ||| || | || ||||| | ||| |||||| || |||| | || Sbjct 2173542 CCCGCACTGCCCAGAAGAAACCGCCCCCGCCCCACAGCTACCCCATGTTCACGGGCAGCG 2173601 Query 14197 CTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC 14256 | ||| || |||| ||||| |||||| | | | || || || || || || | Sbjct 2173602 CGTACAACGCCCTCACACGGGACTTCGTGCAGTACATCTTCGAGAAC---CCCACAGCAC 2173658 Query 14257 ---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCG 14313 | || | | |||| | ||||||| |||||||| |||||| || | ||||||||| Sbjct 2173659 AAAAGTTCCTCGAGTGGTCCAAGGACACCTACAGCCCTGACGAGTACGTCTGGGCCACCC 2173718 Query 14314 TGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCG 14372 || | | ||| |||| |||||||| | || ||| || |||| | | |||| Sbjct 2173719 TGAACCGCATG-CCGGGCGTGCCGGGGGGCGCGCCCCTCAGCGATAAGTTCCAGCTCTCG 2173777 Query 14373 GACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAA 14432 |||||| ||| | | | ||||||||| | ||| |||||||| |||| || Sbjct 2173778 GACATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATCAGCAAG 2173837 Query 14433 GGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCC 14492 || || | |||||||| ||| |||| |||| | | |||||||||||| |||| Sbjct 2173838 GGCGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTG 2173897 Query 14493 GGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGA 14551 ||||||||| ||| || | | | | | || || | ||||||||||||||| ||| Sbjct 2173898 GGCGACGTGCCCTGGATGCTGCAACAACAC-CATCTCCTGGCCAACAAGTTCGACCCCGA 2173956 Query 14552 GACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | |||||| ||||||| ||||| || ||| || ||||| Sbjct 2173957 GGTGGACGATGCGGCCGTGCAGTGTCTCGAGGAGCACCTGCGC 2173999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658720253013760