Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq12 129 5e-25 seq30 87.8 1e-12 >seq12 Length=147836772 Score = 129 bits (142), Expect = 5e-25 Identities = 142/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 46352370 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 46352429 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 46352430 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 46352488 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || || || ||||||||||||||| |||||||| || || || || | Sbjct 46352489 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTGGAACC-CT-ACAAAAC 46352546 Query 30402 ACAG 30405 |||| Sbjct 46352547 ACAG 46352550 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 46348736 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 46348795 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || |||||||| ||||| || || || | || || | Sbjct 46348796 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCATGACAATTCACCATTTAGA 46348855 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || ||||| || | ||| ||||| ||||| | |||||| ||| Sbjct 46348856 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGG 46348900 >seq30 Length=68733010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| || | || ||||||||| | | ||| | ||||| || || Sbjct 68179539 TTGAGCTCCCTGCTGAGCACAATATTAATCCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 68179480 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || ||||||||||||| | ||||| || ||| Sbjct 68179479 ATGGAGAACCACGTTTTCTTACCCATTATCACTGCATTCTGTTTACCT 68179432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406299005659692