Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq12 120 3e-22 >seq12 Length=147836772 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||||||||||||||| | || || ||||| || || ||||| |||| Sbjct 46348744 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 46348803 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || ||||| || ||||| Sbjct 46348804 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCATGACAATTCACCATTTAGAACATAGAA 46348863 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 ||||| |||| ||||| || || | |||||||| Sbjct 46348864 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAG 46348899 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||||| | || || ||||| |||| ||||| ||||| || ||||| || || Sbjct 46348899 CTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTG 46348840 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| Sbjct 46348839 TCATGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCC 46348780 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || | ||||||||||||||||| || |||||| Sbjct 46348779 AGCTATTCACTGCTCACGTACATGATTGCCCATGTC 46348744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 46352380 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 46352439 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || ||||| | ||| ||||| |||||| Sbjct 46352440 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTC 46352499 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || | |||||||| |||| || |||| Sbjct 46352500 ACACCTTTTGCAGAGAGCTCTTTGGCATTTGTGG 46352533 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || |||| |||||||| | || |||||||| ||||| ||| | ||||| | Sbjct 46352533 CCACAAATGCCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCGC 46352474 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 | || || ||||| |||| ||| ||| | | |||||||| || ||||| || || | Sbjct 46352473 GTGAGTTCCTGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGT 46352414 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || ||||| || || || Sbjct 46352413 ATGGTTTCCAGTGGAGGCATTTTGGAGCAGAATA 46352380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249506852720