Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10 132 1e-25 seq7 129 1e-24 >seq10 Length=11116859 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| ||||| || ||||| |||| ||||| |||| || || | ||| || Sbjct 3464521 CAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3464580 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| || ||||| || | || ||||| || ||||| |||||||| || Sbjct 3464581 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATC 3464640 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || ||||| || | ||||| || Sbjct 3464641 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3464700 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 3464701 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3464733 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| |||| || || | ||| || Sbjct 3464749 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3464808 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || | || ||||| || ||||| |||||||| || Sbjct 3464809 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3464868 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 3464869 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 3464928 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3464929 CTTGCCAGTCA 3464939 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| |||| || || | ||| || Sbjct 3465205 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3465264 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| || ||||| || | || ||||| || ||||| |||||||| || Sbjct 3465265 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3465324 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 3465325 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3465384 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3465385 CTTGCCAGTCA 3465395 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | | || | ||| || Sbjct 3464977 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTC 3465036 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| || ||||| || | || ||||| || || |||||||||||||| Sbjct 3465037 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 3465096 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 3465097 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3465156 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 3465157 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3465189 Score = 123 bits (136), Expect = 6e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| || ||||| | || || | ||||| Sbjct 3464200 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGGCCATC 3464259 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| || | || ||||| || ||||| |||||||| || Sbjct 3464260 TTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3464319 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 3464320 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 3464379 Query 225681 CTTGCC 225686 |||||| Sbjct 3464380 CTTGCC 3464385 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| || ||||| | || || | ||| || Sbjct 3465538 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGCCCGTC 3465597 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || ||||||||||| || ||||| || | || ||||| || ||||| ||||||||||| Sbjct 3465598 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 3465657 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 3465658 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 3465717 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 3465718 CTTGCCAGTCA 3465728 >seq7 Length=14042894 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||||||||| ||||| || ||||| |||| ||||| || | || || Sbjct 12378445 CGCAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 12378504 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| ||||| || | || ||||| || || || ||| Sbjct 12378505 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 12378564 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| |||||||| |||||| || |||||||| || || || || | Sbjct 12378565 TCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGG 12378624 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || || | ||| | ||||| Sbjct 12378625 GTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || || ||||| || |||| ||||| || | | || | ||||| Sbjct 12378681 CAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 12378740 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||| ||||| || | || ||||| || || || ||||||||||| Sbjct 12378741 CTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 12378800 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 12378801 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 12378860 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 12378861 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATTTT 12378896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192496042316894