Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq12 122 6e-23 >seq12 Length=147836772 Score = 122 bits (134), Expect = 6e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 46348736 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 46348795 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||||||| ||||| || || || | || |||| Sbjct 46348796 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCATGACAATTCACCATTTAGA 46348855 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || ||||| || | ||| ||||| ||||| | |||||| ||| Sbjct 46348856 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGG 46348900 Score = 120 bits (132), Expect = 2e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 46352370 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 46352429 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 46352430 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 46352488 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| || || || | ||||||||||||| |||||||| || || || || | Sbjct 46352489 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTGGAACC-CT-ACAAAAC 46352546 Query 27668 ACAG 27671 |||| Sbjct 46352547 ACAG 46352550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369496837747931