Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq10 114 3e-20 >seq7 Length=14042894 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || ||||| || || ||||||||||| || | | || | ||||| Sbjct 12378682 AGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCC 12378741 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 12378742 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 12378801 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | |||| ||| || ||||| || || || Sbjct 12378802 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 12378861 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 ||||| || || ||||| ||||||| ||||||||| |||| Sbjct 12378862 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATTTTTCCCT 12378901 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| |||||||| ||||||||||| || | | || | ||||| Sbjct 12378454 AGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 12378513 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 12378514 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 12378573 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || ||||| || || Sbjct 12378574 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATG 12378630 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| ||||||| |||||| Sbjct 12378631 GTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 >seq10 Length=11116859 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| |||||||| ||||||||||| |||| | || | ||| || Sbjct 3464522 AGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCC 3464581 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || |||||||| || Sbjct 3464582 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 3464641 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 3464642 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCGAGGGTGATG 3464698 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 3464699 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3464733 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| || | | || Sbjct 3464968 CCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 3465027 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| || || || ||||| || ||||| |||||||||||||| | | ||| || Sbjct 3465028 GCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATACC 3465087 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 3465088 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 3465144 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 3465145 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3465189 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| |||| | || Sbjct 3464740 CCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 3464799 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| || || || || || |||||||| |||||||||||||| | | || || Sbjct 3464800 GCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 3464859 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| ||||| Sbjct 3464860 TTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACTTC 3464916 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||| || |||| |||||| Sbjct 3464917 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || || || |||||||| ||||| | | || | ||| || Sbjct 3465539 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGCCCGTCC 3465598 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || |||||||| || Sbjct 3465599 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 3465658 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || ||||| || || Sbjct 3465659 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 3465715 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||| || |||| |||||| || Sbjct 3465716 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGTT 3465753 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || || || ||||||||||| |||| | || | ||| || Sbjct 3465206 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCC 3465265 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || |||||||| || Sbjct 3465266 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 3465325 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 3465326 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCGAGGGTGATG 3465382 Query 152070 GTTTTGCCCGTGAGAGTCTT 152089 || ||||| || || ||||| Sbjct 3465383 GTCTTGCCAGTCAGGGTCTT 3465402 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || |||||||| ||||| | | || Sbjct 3464191 CCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGACAGGGT 3464250 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||||| || ||||| |||||||||||||| | | || || Sbjct 3464251 GCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 3464310 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| || || Sbjct 3464311 TTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 3464367 Query 152060 AAGAGTAATAGTTTTGCC 152077 || || || || ||||| Sbjct 3464368 GAGGGTGATGGTCTTGCC 3464385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153786783559971