Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq27 206 4e-48 seq8 107 3e-18 >seq27 Length=49693984 Score = 206 bits (228), Expect = 4e-48 Identities = 224/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||||||| | |||| || ||| | | || Sbjct 22296659 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 22296600 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || |||||||||||||||||||||||| | |||| Sbjct 22296599 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 22296540 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || |||||||| |||||||||| ||| | ||| Sbjct 22296539 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGAGCCCCCATCTCCACCATGG 22296480 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 22296479 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 22296420 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||| ||||| || || || || || || ||||| |||||||||| Sbjct 22296419 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 22296363 Score = 129 bits (142), Expect = 8e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | | ||| || | ||||||||| || |||||||| ||| || || || Sbjct 22294728 TCACCGATCAGAACGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 22294669 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || || || ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 22294668 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATC 22294609 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || ||||| || || |||| || || || | | |||| || |||||| Sbjct 22294608 ATCAGCCCCGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAACCGCAGGTGCTCGGGC 22294549 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||| || || | ||| | |||| ||| |||| || || |||||||| Sbjct 22294548 ACGTGGGGCGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 22294489 Query 9472 CCGTCAATCATCTG 9485 |||| |||||||| Sbjct 22294488 CCGTTGATCATCTG 22294475 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || ||||| || | |||| | Sbjct 22292861 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGAGGAAGGCTTCTTGTG 22292802 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| |||||||||||||| ||| | |||||| ||||| | Sbjct 22292801 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAATTGTAGTCACTATTGTAAGTT 22292742 Query 10028 GGAGGGCTGTCAATCAA 10044 || |||||||||||||| Sbjct 22292741 GGTGGGCTGTCAATCAA 22292725 >seq8 Length=11241730 Score = 107 bits (118), Expect = 3e-18 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 ||||| || ||||||| | |||| ||| ||| |||||| || || || || Sbjct 2353897 TCGGGCACGTGGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCG 2353956 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | | || |||| |||||| | || || |||| || || || ||||| |||||| Sbjct 2353957 AGGGACGCCGTCTTCACGATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAG 2354016 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 ||| | |||||||||||| || | | || || || ||||| || ||||| || | | Sbjct 2354017 TACTCTGGGGAGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATC 2354076 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | ||||| || || || ||| | ||||| |||| ||||||| || || || | | Sbjct 2354077 TCCACCATGCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTTTCCAGCAGCAAGCCTGGG 2354136 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | ||||| ||| || | |||||| || || Sbjct 2354137 TAAAACTCCAGAGCATCAATGTCTCCATACAG 2354168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716856180831040