Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 149 2e-30 seq10 143 6e-29 >seq7 Length=14042894 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || |||||||| ||||| || || ||| Sbjct 12378662 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGTG 12378605 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||||||||| |||||||| ||||||| Sbjct 12378604 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 12378545 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || | || || ||| Sbjct 12378544 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAACA 12378485 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| ||||| ||||| ||||| Sbjct 12378484 TCCAGAAAGAGTCAACTCTGCACCTTGT 12378457 >seq10 Length=11116859 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||||| ||| || | Sbjct 3465186 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 3465129 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| |||||||| ||||||| Sbjct 3465128 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGC 3465069 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || || || | || || | || || ||| Sbjct 3465068 AGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTCTCTGACTACAACA 3465009 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 3465008 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 3464969 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||||| ||| || | Sbjct 3464730 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 3464673 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||| || ||||| || ||||| ||||||| Sbjct 3464672 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGC 3464613 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || || || | || || |||| || ||| Sbjct 3464612 AGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAACA 3464553 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| ||||| ||||| || || || | || ||| Sbjct 3464552 TCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCGCCTGAGA 3464512 Score = 132 bits (146), Expect = 1e-25 Identities = 148/196 (76%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAA 178005 || || || |||||||||||||||| ||| || |||||||| ||||| ||||| | Sbjct 3464385 GGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTGACACCATTGAGAATGTCAAGGCCA 3464328 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| ||||| || ||||| || || || |||||||| | || ||||| || || || | Sbjct 3464327 AGATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGGAAGC 3464268 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| |||||||| | || || | ||||||||| |||| || ||||| || ||||| | Sbjct 3464267 AGCTGGAAGATGGCCGCACCCTGTCTGATTATAACATCCAGAAGGAATCCACCCTGCACC 3464208 Query 178126 TTGTTTTGAGACTCAG 178141 | || || | ||||| Sbjct 3464207 TGGTGCTGCGCCTCAG 3464192 Score = 120 bits (132), Expect = 7e-22 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGA 177993 || || || || || || || |||||||||||||||| ||| || |||||||| |||| Sbjct 3465402 AAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTGACACCATTGAGA 3465345 Query 177994 ACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 | ||||| ||||| ||||| || ||||| || || || |||||||| | || |||| Sbjct 3465344 ATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCT 3465285 Query 178054 TCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAAT 178113 | || || || ||||| || || || | || || |||| || ||| |||| || |||| Sbjct 3465284 TTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAAT 3465225 Query 178114 CAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||||| || || || | || ||| Sbjct 3465224 CCACCCTGCACCTGGTGCTGCGCCTGAGA 3465196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203695712123394