Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1803 93.3 5e-14 seq62588 87.8 2e-12 >seq1803 Length=26599 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || || |||| ||||| | |||||| || ||||| || |||||||| || ||||| ||| Sbjct 5417 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 5358 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || ||||| || ||||| | ||| || || ||||| || || || || Sbjct 5357 ACTCCTAGTCCCATATCTCCCGACCTCTGATAAAGTTGGCAAGACAGTTCACCATTTAGA 5298 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || || | ||||| Sbjct 5297 ACATAGAACTGGCAAAGGGCATGGCATGGAGGTAAAGCCAT 5257 >seq62588 Length=1718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624 ||| |||| | ||| | || |||||||| ||||| ||||| ||| | || || | || Sbjct 1362 ACTGACATCTACCTGCTCAATTTGGCAATTTCTGATTTGCTGTTTATATTTTCTCTTCCT 1421 Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684 |||||| || |||| ||| |||||| |||| |||||| | ||||||| | Sbjct 1422 TTTTGGG----CT-TATTATGCTGT-TCATGACTGGATTTTTGGGGAGGCGCTGTGTAGA 1475 Query 9685 CTGCTCAGGGGTGTGTGT-TACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCT 9743 | ||| ||||| | | | || | | |||||| | |||| | ||| |||||| | Sbjct 1476 ATTCTCTCAGGTGTCTACCTCCTTGGCT-TCTACAGCGGGATCTTCTTCATAATCCTGTT 1534 Query 9744 AACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGT 9803 || ||||||||||||| || | || ||||||| |||||| | ||| ||||| Sbjct 1535 GACCATAGACAGGTATCTGGCCATAGTGCATGCTGTGTTTGCTTTAAAAGCTAGGACAGT 1594 Query 9804 AACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGC 9845 |||| ||||| | ||| ||| | || |||||||| || Sbjct 1595 CACCTACGGCATCCTCACCAGTGCTTTCACTTGGTTTCTTGC 1636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510 ||| |||| | ||| | || |||||||| ||||| ||||| ||| | || || | || Sbjct 1362 ACTGACATCTACCTGCTCAATTTGGCAATTTCTGATTTGCTGTTTATATTTTCTCTTCCT 1421 Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570 |||||| || |||| ||| |||||| |||| |||||| | ||||||| | Sbjct 1422 TTTTGGG----CT-TATTATGCTGT-TCATGACTGGATTTTTGGGGAGGCGCTGTGTAGA 1475 Query 176571 CTGCTCAGGGGTGTGTGT-TACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCT 176629 | ||| ||||| | | | || | | |||||| | |||| | ||| |||||| | Sbjct 1476 ATTCTCTCAGGTGTCTACCTCCTTGGCT-TCTACAGCGGGATCTTCTTCATAATCCTGTT 1534 Query 176630 AACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGT 176689 || ||||||||||||| || | || ||||||| |||||| | ||| ||||| Sbjct 1535 GACCATAGACAGGTATCTGGCCATAGTGCATGCTGTGTTTGCTTTAAAAGCTAGGACAGT 1594 Query 176690 AACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGC 176731 |||| ||||| | ||| ||| | || |||||||| || Sbjct 1595 CACCTACGGCATCCTCACCAGTGCTTTCACTTGGTTTCTTGC 1636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589604871327280