Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq514 168 7e-37 seq29751 132 5e-26 seq24567 87.8 2e-12 >seq514 Length=5730 Score = 168 bits (186), Expect = 7e-37 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || ||||| ||||||||| | || ||||| || Sbjct 5558 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCC 5499 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | ||||| |||||| || || | ||||| |||||||| ||| | || Sbjct 5498 AGCGACACCATCGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGA 5440 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 5439 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 5380 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| ||||| || ||| ||||| ||||||||||| Sbjct 5379 CAACATCCAGAAGGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGCGGC 5328 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 5106 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 5047 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| ||| | || || Sbjct 5046 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 4988 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 4987 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4928 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || ||| ||||||||||||| || Sbjct 4927 CATCCAGAAGGAATCCACCCTGCACCTTGTGCTGCGCTTGAGGGGTGG 4880 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGA 40772 || ||||| ||||||||| | || ||||| ||| ||||| | | | ||||| |||||| Sbjct 5310 ACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAAAACG-TCAAGGC 5252 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| ||| | || ||||| | || |||| || || || Sbjct 5251 CAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCCGGTAA 5192 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| || | ||||||||| |||||||||||||||||||| |||| || || Sbjct 5191 GCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTACA 5132 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||| ||||| | || || ||| Sbjct 5131 CTTGGTGCTGCGCCTCAGAGGTGGC 5107 >seq29751 Length=8246 Score = 132 bits (146), Expect = 5e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| | Sbjct 224 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 165 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 164 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 106 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||| || |||||||| Sbjct 105 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAA 46 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||| |||||||| |||| ||||| || ||| ||||| ||||||| Sbjct 45 CATTCAGAAGGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGG 1 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 452 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 393 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | || || | ||||| || ||||| ||| | || ||| Sbjct 392 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 333 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||| || ||||| ||| Sbjct 332 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTATAAC 273 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 272 ATCCAGAAGGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 225 >seq24567 Length=19836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 10766 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 10707 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 10706 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 10647 Query 117162 ACGAGG 117167 | |||| Sbjct 10646 ATGAGG 10641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514807140564320