Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1803 98.7 7e-16 >seq1803 Length=26599 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/148 (75%), Gaps = 8/148 (5%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| ||||| | ||||| || ||| Sbjct 1953 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCTCCCTCCTCT 1894 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 1893 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGTGATCCATTAGCATCCCAAAT 1838 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | || |||||| Sbjct 1837 CTTCACACCCTTTGCAGAGAGTTCTTTG 1810 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 5411 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 5352 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || || | |||| ||||| Sbjct 5351 AGTCCCATATCTCCCGACCTCTGATAAAGTTGGCAAGACAGTTCACCATTTAGAACATAG 5292 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || || || ||||| Sbjct 5291 AACTGGCAAAGGGCATGGCATGGAGGTAAAGCCAT 5257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346513584555740