Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq55616 100 3e-16 seq514 91.5 2e-13 seq27516 82.4 9e-11 >seq55616 Length=10312 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 9681 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGTATACTCACCACTA 9740 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 9741 TACTAACGAGGAGTG 9755 >seq514 Length=5730 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | |||| |||||| || | ||| ||||| || || ||||| |||| | Sbjct 5108 CCACCTCTGAGGCGCAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5167 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||||||||| || || || || | |||||| || | || Sbjct 5168 AGGGTGCGCCCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGA 5227 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||||| ||| || |||| | | | |||||||| | || || Sbjct 5228 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACC 5287 Query 43137 TCGACCGTGATGGTTTTGCCCGT 43159 || | |||||||| ||||| || Sbjct 5288 TCCAGGGTGATGGTCTTGCCAGT 5310 >seq27516 Length=12853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 42990 CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCG 43049 ||| | |||||||| ||||| |||| ||| || || | || ||||||||||||||||| Sbjct 386 CTCACTTTTTGAATGTTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCA 327 Query 43050 AATATGAGTCGCTGCTGGTC 43069 || || |||||||||||||| Sbjct 326 AAAATCAGTCGCTGCTGGTC 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571360274578960