Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq514 116 2e-21 seq29751 107 1e-18 >seq514 Length=5730 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | |||||| ||||| | || ||| ||||| ||||||||||| ||| Sbjct 5329 CCGCCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5388 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || |||| |||||| || ||| Sbjct 5389 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 5448 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | ||| | | ||||| Sbjct 5449 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACC 5508 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||||||||||||||| Sbjct 5509 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5555 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| ||||| | || ||| ||||| ||||||||||| ||||| || | || Sbjct 4894 CAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4953 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| |||||| || ||| | || |||||||| Sbjct 4954 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 5013 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5014 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 5073 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 5074 CTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 5106 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||| ||||| ||| ||| ||||| ||||||||||| ||||| || | || Sbjct 5122 CAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 5181 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || |||| |||||| || ||| | || ||||||||| Sbjct 5182 TTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 5241 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | ||| | | ||||| |||| |||||||| Sbjct 5242 CTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 5301 Query 34357 TTTGCCGGT 34365 ||||| || Sbjct 5302 CTTGCCAGT 5310 >seq29751 Length=8246 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||| | |||||| ||||| | || ||| ||||| ||||||||||| ||||| || Sbjct 6 CAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCG 65 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | || |||| ||||||||| || || || |||| |||||| ||| ||| | || || Sbjct 66 CCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTC 125 Query 34291 CTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 |||||| ||||| ||| | | | || | ||| | | || || || | || Sbjct 126 CTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGT 185 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| ||||| || || || ||||||||||||||||| Sbjct 186 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 224 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| ||||| | || ||| ||||| ||||| ||||| ||| Sbjct 226 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGAC 285 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || |||| |||||| || ||| Sbjct 286 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 345 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||||| | || | || | || | | || || Sbjct 346 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTCACATTCTCAATGGTGTCACTGGGCTCAAC 404 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 405 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322820074713920