Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq44843 141 6e-29 seq12338 98.7 7e-16 >seq44843 Length=947 Score = 141 bits (156), Expect = 6e-29 Identities = 255/371 (69%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || |||||| || ||||| ||||||| | |||||| || | Sbjct 887 ATCAACTGCTCGGGGATCGTCCGCGGGGATGAGGAAGCCCTCCGGAAGGCCCAGCTCAGC 828 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCT----ATTACCTCAACAT 107638 |||||||| || || ||| || || || ||| |||| | ||||| ||||| Sbjct 827 AACCTGGAGGTCGCCAACAAGAGG----CTTTCCCTGACACCCGACGAGTACCTGAACAT 772 Query 107639 AACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAA 107698 || | ||||| ||||||||| | || |||||| ||||||| ||||| | Sbjct 771 GACAAAGGACTGCCGCAGCTTCAAGGACACCCGGCGGTTCATCGAGTTCCCGCTGAGCCA 712 Query 107699 AGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGG--TCCATGAGAAGATTGAAAAC 107756 || ||| ||| |||||||| |||||||| ||||| ||||||| || || || | Sbjct 711 GGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCACATCCATGACAAAATCGAGATG 652 Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 || || ||||| ||| | || | || | ||| |||||||| ||||| ||||| || || Sbjct 651 TTCGAGCGGCTTCTGAGGTCCCTCTACGTCCCCCAGAACATCTACTGCGTCCATGTTGAC 592 Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 |||||||| | | ||| | ||||| || |||||| | ||||||||||||| Sbjct 591 CGCAAGTCCCCGGCTGCCTTCCAGGAGGCTGTGCGGGCCATCGTAGCCTGCTTCCCCAAC 532 Query 107877 GTCTTCATGGC 107887 ||||| |||| Sbjct 531 GTCTTTGTGGC 521 >seq12338 Length=14826 Score = 98.7 bits (108), Expect = 7e-16 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||||||| ||||| | Sbjct 10712 TTGAGTGGGCAAAAGACACTTACAGCCCGGATGAGTACCTGTGGGCCACCGTTCAGAGAA 10771 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | ||| || || || |||||| | | || |||||| Sbjct 10772 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGAC---AAGTATGATGTTTCTGACATG 10827 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || || || || || || Sbjct 10828 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGCA 10887 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || | || ||| |||| | || | | |||| ||| |||| || ||| Sbjct 10888 CCCTACCCGCCATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 10947 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 10948 CTGAACTGGATACTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 10995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347997226737468