Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq29751 113 4e-20 seq514 109 4e-19 >seq29751 Length=8246 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| |||||||||||||||||||| ||| ||| | || ||||| || Sbjct 21 GTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTG 80 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| || ||| || ||||| || | || ||||||||| || || Sbjct 81 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 140 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| ||||| | ||| || |||||||| || Sbjct 141 CGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 200 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||||||||| |||||| Sbjct 201 CAGGGTCTTCACAAAGATCTGCATG 225 Score = 105 bits (116), Expect = 5e-18 Identities = 174/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | |||||| ||| |||||||| ||||| ||||| Sbjct 225 GCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGA 284 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| || ||| || || || || Sbjct 285 CAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 344 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || || || | | | | |||| | ||| || Sbjct 345 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAAC 404 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG--CCTCAA 45346 ||| | ||| || |||||||| ||||| |||||||||||||| |||||| || | ||| Sbjct 405 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCTGAACTGCAA 464 Query 45347 TACACACAGA 45356 ||||||||| Sbjct 465 AACACACAGA 474 >seq514 Length=5730 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | | || | |||||| ||| |||||||| ||||||||||| | Sbjct 4880 CCACCCCTCAAGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4939 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| || || || || Sbjct 4940 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 4999 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 5000 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACT 5059 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 5060 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 5107 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| |||||||| ||||||||||| ||| ||| | || ||||| || Sbjct 5352 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 5411 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| || ||| || || || || | |||||||||||| || || Sbjct 5412 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 5471 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||||| ||| || |||||||| || Sbjct 5472 GGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGT 5531 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || |||||||||||||| ||||| || |||| Sbjct 5532 CAAGGTCTTCACAAAGATCTGCAT-TTTCCTC 5562 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | |||||||| || ||| |||||||| ||||||||||| Sbjct 5107 GCCACCTCTGAGGCGCAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 5166 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || ||||| || |||| || ||| || || || || Sbjct 5167 CAGGGTGCGCCCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGG 5226 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | |||| | ||| || Sbjct 5227 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGAC 5286 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCA 45314 ||||| ||| || |||||||| |||| Sbjct 5287 CTCCAGGGTGATGGTCTTGCCAGTCA 5312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394767128013622