Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq24567 120 4e-22 seq13082 120 4e-22 seq104 120 4e-22 seq30096 93.3 6e-14 >seq24567 Length=19836 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 10641 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 10700 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 10701 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10760 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 10761 CAACCACTCTCTCACC 10776 >seq13082 Length=16488 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| |||| |||||| ||||| |||||||| ||||||| || | || | Sbjct 13539 CCTCATCTCTACTGATTAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 13598 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 13599 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 13658 Query 36300 C 36300 | Sbjct 13659 C 13659 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||| |||||||||||||| || ||||| ||||| Sbjct 15678 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTTTCCATGGC 15737 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || |||||||| | |||||| || | ||||||||| Sbjct 15738 AATCTGGAAGCCATAGAAACAACGAGCCTCTGTGCTTTGTACTTCT 15783 >seq104 Length=9301 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || ||||||||||||||||| ||| Sbjct 1994 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 2053 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 2054 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 2113 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 2114 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 2173 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 2174 TCTATTGTCTCACT 2187 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9448 ACAAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCT 9507 |||| | |||||| ||| | |||| | |||||||| | ||| ||||| ||||||| Sbjct 3282 ACAACAAAAAAATCATCAATATGACAACATACCCTGCTCCGAATTTGCTGAAGTCTCTCT 3341 Query 9508 TTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTT 9567 |||| || | || ||||||||||| ||||||| || |||||||| || || || |||| Sbjct 3342 TTGACTGCAAGGTGTATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTT 3401 Query 9568 GCATAACGACATGCACATCATAGAAA 9593 ||| |||| ||| ||||||||| Sbjct 3402 GCAAGACGATGGACACGTCATAGAAA 3427 >seq30096 Length=29002 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 19516 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 19575 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || |||||||| ||||| |||||| || || ||| | | || || ||||||| || Sbjct 19576 TCTTCTTTTCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 19634 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 19635 CTCCAGGTAGATGGC 19649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657646409848880