Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq54462 159 5e-34 seq53428 107 3e-18 >seq54462 Length=24836 Score = 159 bits (176), Expect = 5e-34 Identities = 223/309 (72%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 19498 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 19557 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||| ||||| || |||||||| | |||| Sbjct 19558 TATTGATTATTTCAAAGCCCACTTTTCCACCGAATGTGCTAGGCTTCCAGTACTCAGGGG 19617 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 19618 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAAAACGGTGCTCCAATCTCCACCATTG 19677 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| | |||||| || | ||||| |||| Sbjct 19678 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 19736 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 19737 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 19796 Query 8977 TTTATTAAT 8985 ||||| || Sbjct 19797 ATTATTGAT 19805 Score = 116 bits (128), Expect = 5e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 21582 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 21641 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | || ||||| || ||||| || ||||| |||||||| | || || Sbjct 21642 ATGTCACAGACCCGATTATGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 21701 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || | | ||||| Sbjct 21702 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 21761 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 21762 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 21821 Query 9862 TG 9863 || Sbjct 21822 TG 21823 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 23489 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGACCCACTGGTGGAAGGCTTCTTGTGTA 23548 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| |||||||||||||| ||| || || ||||| | || Sbjct 23549 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTATTGTAAGTTGG 23608 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAG-CAAAAGTGG 10452 |||||||||||||| | ||||| ||| | ||| |||||||| Sbjct 23609 TGGGCTGTCAATCAAGTGTGATCTTGCTGGAAAAGAAAAAAGTGG 23653 >seq53428 Length=17668 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||| || || |||||||||||||| | || | Sbjct 3609 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGAG 3550 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || ||||||||||||||||| || | ||| | |||| Sbjct 3549 AGCAGATGGGGTTTCCAAGAAGCCCCTTGAGGGAAAACGGAGCTCCTATCTCCACCATGC 3490 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| || | || || | || || || || ||||||| Sbjct 3489 TTTCTCCTAAAATGCCATTGGGTTGGAGTTTCTCAAGCAGCAAGCCCACATAAAACTCCA 3430 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 3429 GAGCGTCAATGTCTCCATAGAG 3408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707958139578080