Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq514 100 2e-16 >seq514 Length=5730 Score = 100 bits (110), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || || ||||| || | || ||| | || |||||| || Sbjct 5558 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCC 5499 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | ||||| ||||| ||||| || ||||| || || ||| Sbjct 5498 AGCGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAT 5439 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| ||||| | | |||||||| || ||||||| Sbjct 5438 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 5399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | ||||| ||| ||| Sbjct 5106 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 5047 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| |||||||| || || ||||| Sbjct 5046 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4987 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | |||||||| || ||||||| Sbjct 4986 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 4950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 24012 TTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAA 24071 || ||||| || | || ||| | || |||||| ||| |||||||||||| | ||||| Sbjct 5313 TTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAAAACGTCAAG 5254 Query 24072 CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGC 24131 ||||| ||||| || ||||| || || ||||| ||||| ||||| | | ||| Sbjct 5253 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCCGGT 5194 Query 24132 AAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATT 24191 ||||| || ||||||| | | | | || || ||||| || || ||||| || | Sbjct 5193 AAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTA 5134 Query 24192 CATTTAGTG 24200 || || ||| Sbjct 5133 CACTTGGTG 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429600744237210