Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq514 105 6e-18 seq29751 102 8e-17 seq30096 95.1 1e-14 >seq514 Length=5730 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| |||||||| | || | ||| || ||||| || |||||||| || | Sbjct 4880 CCACCCCTCAAGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4939 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 4940 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 4999 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 5000 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACT 5059 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 5060 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 5107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||||| | || | ||| || ||||| || |||||||| || Sbjct 5328 GCCGCCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 5387 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 5388 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 5447 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | || ||| ||| ||||| Sbjct 5448 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGAC 5507 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || || || |||||||| Sbjct 5508 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5555 >seq29751 Length=8246 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| || ||||| ||||||||||| || || |||||| Sbjct 10 CGCAGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCA 69 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | |||||| || || || || ||||| ||| Sbjct 70 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 129 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | ||| | || ||| ||| ||| | || | ||| | | Sbjct 130 TCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATG 189 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || || || ||||||||| Sbjct 190 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | ||| || ||||| || ||||| || || Sbjct 225 GCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGA 284 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 285 CAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 344 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || || | | ||| | || || ||| ||| | Sbjct 345 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAAC 404 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 405 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 453 >seq30096 Length=29002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| ||||||||||| |||| || |||||||| || |||| |||||| | | Sbjct 17536 CACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAG 17595 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || ||||| |||||||||||| ||| ||||| Sbjct 17596 TCTTTGTACAGCATGTACGGTGTGCCGGTCTC 17627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471635295962880