Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq514 95.1 1e-14 seq29751 87.8 1e-12 >seq514 Length=5730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||| ||||| || ||||||||||| | || ||| | || |||| || Sbjct 5353 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 5412 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || || || | |||||| ||||| || || Sbjct 5413 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 5472 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| |||||| |||| ||||||||| || || | Sbjct 5473 GC--CTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAG 5530 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 ||| || || ||||| ||||||||||| Sbjct 5531 TCAAGGTCTTCACAAAGATCTGCATTTT 5558 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||| ||||| || ||||||||||| | || ||| | || |||| || Sbjct 4904 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 4963 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || || || | ||| || ||||| || || Sbjct 4964 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 5023 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | |||||| ||||| ||||||||| || || | Sbjct 5024 GC--CTTGACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCTG 5081 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| |||||||| Sbjct 5082 TCAGGGTCTTCACAAAGATCTGCAT 5106 >seq29751 Length=8246 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||| ||||| || ||||||||||| | || || | || |||| || Sbjct 22 TGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTGC 81 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| || || || | ||| || ||||| || | | Sbjct 82 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTC 141 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| |||||| || | ||||||||| || || ||| Sbjct 142 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 201 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| |||||||| Sbjct 202 AGGGTCTTCACAAAGATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404772120226180