Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq54231 91.5 1e-13 seq28406 87.8 1e-12 seq35859 86.0 4e-12 seq37081 82.4 5e-11 >seq54231 Length=45989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||| ||||||| || |||||||| || | || |||| ||| Sbjct 30984 AAGCCTGTTCCCTTGGCTTTGGTTTCACTGGATAGTAGGTACAGACAGTGGGAATCGCGT 31043 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| ||||||||||||||| || Sbjct 31044 TCATCCATTCATGCGCATCACTAATTAGATGATGA 31078 >seq28406 Length=8198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| Sbjct 7917 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACTTG---GCTATCGGTCTCAT 7861 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 7860 GCCGGTATTTAGCCTTA 7844 >seq35859 Length=5608 Score = 86.0 bits (94), Expect = 4e-12 Identities = 68/82 (83%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25915 TGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATG 25969 |||||||||||||||| |||||||| ||||| || ||||||||| |||| |||||| Sbjct 1502 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 1443 Query 25970 CGCGTCACTAATTAGATGACGA 25991 | ||||||||||||| || || Sbjct 1442 CATGTCACTAATTAGAAGATGA 1421 >seq37081 Length=36023 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||| |||||||||| || | ||| | ||| || ||||| || Sbjct 13964 AAGCCTATTCCCTTGGCTATGGTTTCGCTGGACAATAGGTGGGGACAGTGGGAATCTTGT 13905 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| | |||||||||||||||| Sbjct 13904 TCATCCATTCATGCACATCACTAATTAGATGAC 13872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334686014663042