Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq514 105 6e-18 seq29751 100 2e-16 >seq514 Length=5730 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || || || || || || |||| || || || || || Sbjct 5558 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCC 5499 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || | |||| || || || ||||||||||| ||||| || ||| Sbjct 5498 AGCGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAT 5439 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| ||| | || ||| |||||| | || || ||| Sbjct 5438 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 5379 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || ||||||||| Sbjct 5378 AACATCCAGAAGGAATCCACC 5358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || || || || |||| || || || || ||| ||| ||| | || | |||| Sbjct 5313 TTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAAAACGTCAAG 5254 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || || ||||||||||| ||||| || ||||| || | || || |||||||| Sbjct 5253 GCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCCGGT 5194 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 || ||| | || ||| |||||| | || || |||||||| || || |||||||| || Sbjct 5193 AAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTA 5134 Query 22420 CATTTAGTTTTGCG 22433 || || || |||| Sbjct 5133 CACTTGGTGCTGCG 5120 >seq29751 Length=8246 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || ||| | Sbjct 224 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 165 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| |||||||| Sbjct 164 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||| | || || |||||| Sbjct 104 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAAC 45 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||||||| Sbjct 44 ATTCAGAAGGAATCCACC 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419400704237830