Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq514 168 1e-36 seq29751 158 2e-33 >seq514 Length=5730 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| || | ||| || ||||| || || |||||||| || || || || || | ||| Sbjct 4891 GCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 4950 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | |||||| || || || || || || || || || || |||||||||||||| Sbjct 4951 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 5010 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||| || ||||| ||||||||| |||||||||||| | || ||||||| |||||| Sbjct 5011 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 5070 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || || |||||||| || || |||||||| Sbjct 5071 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 5106 Score = 159 bits (176), Expect = 6e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || ||||| || || |||||||| || || || || || | | Sbjct 5338 AGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 5397 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||| ||| Sbjct 5398 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCC 5457 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| ||||||||||| ||| | || || |||| ||| Sbjct 5458 TTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTC-GCTGGGCTCGACCTCCAGGGT 5516 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || || || | |||||| || || ||||||||| Sbjct 5517 GATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 5556 Score = 156 bits (172), Expect = 8e-33 Identities = 153/195 (78%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| ||||||||||| ||||| || || |||||||| || || || || || | | Sbjct 5117 AGGCGCAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 5176 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || || || || |||||||| ||| Sbjct 5177 CCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCC 5236 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| ||||||||||| ||| | || || |||| ||| Sbjct 5237 TTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTC-GCTGGGCTCGACCTCCAGGGT 5295 Query 68423 GATGGTTTTTCCCGT 68437 |||||| || || || Sbjct 5296 GATGGTCTTGCCAGT 5310 >seq29751 Length=8246 Score = 158 bits (174), Expect = 2e-33 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || ||||| || || || ||||| || || || || || | | Sbjct 7 AGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGC 66 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || ||||| |||||||||||| Sbjct 67 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 126 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||| ||| ||| |||||||| ||| | || || || | ||| Sbjct 127 TTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCAAGGGT 185 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| || || |||||||| Sbjct 186 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 224 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || ||||| || || ||||||||||| || || || || | | Sbjct 235 AGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGAGTGCGC 294 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || || || |||||||||||| Sbjct 295 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 354 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| || || || ||| |||||||| | || || || | |||| Sbjct 355 TTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 414 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 415 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920885309445040