Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq514 109 5e-19 seq29751 105 6e-18 >seq514 Length=5730 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | || || || || || || ||||| || || ||||| | Sbjct 5341 CGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 5400 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||| || || |||||||||||| Sbjct 5401 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 5460 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||||| |||||| | |||||| || | ||| | Sbjct 5461 TCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 5520 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 5521 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5555 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| |||| || || || || || || ||||| || || ||||| | Sbjct 5120 CGCAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 5179 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | ||||||||| || || |||||||||||| Sbjct 5180 TCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 5239 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||||| |||||| | |||||| || | ||| | Sbjct 5240 TCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 5299 Query 127079 GTTTTGCCGGTCA 127091 || ||||| |||| Sbjct 5300 GTCTTGCCAGTCA 5312 >seq29751 Length=8246 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | || || || || ||||| ||||| || || ||||| | Sbjct 10 CGCAGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCA 69 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 70 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 129 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||| | | || | |||||| | ||| || || | ||| | Sbjct 130 TCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATG 189 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 190 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475120506347680