Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq54462 141 1e-28 seq53428 100 4e-16 >seq54462 Length=24836 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 19498 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 19557 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||| ||||| || ||||||||| | |||| Sbjct 19558 TATTGATTATTTCAAAGCCCACTTTTCCACCGAATGTGCTAGGCTTCCAGTACTCAGGGG 19617 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| |||||||| || || | ||| | || Sbjct 19618 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAAAACGGTGCTCCAATCTCCACCATTG 19677 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 19678 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 19737 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 19738 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 19793 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 21582 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 21641 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| || ||||||||||||||||| || || |||||||| || || || Sbjct 21642 ATGTCACAGACCCGATTATGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 21701 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 21702 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 21761 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 21762 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 21821 Query 9967 TG 9968 || Sbjct 21822 TG 21823 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 20374 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 20433 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 20434 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 20491 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 20492 CACTCAAGTGTTGCACATA 20510 >seq53428 Length=17668 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || || ||||||||||||||| | || ||||||||| ||| | | ||||| Sbjct 3583 CCGCCAAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAGCCCC 3524 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | |||||||||||| || | ||| | ||||| || || || ||| || ||| | Sbjct 3523 TTGAGGGAAAACGGAGCTCCTATCTCCACCATGCTTTCTCCTAAAATGCCATTGGGTTGG 3464 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 |||| || | | ||||| || | || | ||| || | ||| |||||||| || Sbjct 3463 AGTTTCTCAAGCAGCAAGCCCACATAAAACTCCAGAGCGTCAATGTCTCCATAGAGCTCT 3404 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 3403 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 3371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723149180438800