Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq514 131 4e-25 seq29751 127 5e-24 >seq514 Length=5730 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || || ||||| |||| ||||||||||| || || | ||||| Sbjct 4894 CAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4953 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 4954 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 5013 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 5014 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 5073 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 5074 CTTGCCTGTCAGGGTCTTCACAAAGATCTG 5103 Score = 127 bits (140), Expect = 5e-24 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || || ||||| |||| ||||||||||| || || | ||||| Sbjct 5343 CAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 5402 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| || || || Sbjct 5403 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 5462 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| ||||| |||||| | | || || |||| ||||| || Sbjct 5463 CTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 5522 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || | || |||||||| || || |||||| Sbjct 5523 CTTGCCAGTCAAGGTCTTCACAAAGATCTG---CATTTT 5558 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| ||||| || ||||| |||| ||||||||||| || || | ||||| Sbjct 5122 CAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 5181 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || ||| || || || Sbjct 5182 TTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 5241 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| ||||| |||||| | | || || |||| ||||| || Sbjct 5242 CTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 5301 Query 199597 CTTACCCGT 199605 ||| || || Sbjct 5302 CTTGCCAGT 5310 >seq29751 Length=8246 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || || ||||| || | ||||||||||| || ||| | ||||| Sbjct 12 CAGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCATC 71 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 72 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 131 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || || | ||||| || Sbjct 132 CTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 191 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 192 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 221 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || || ||||| |||| ||| ||||||| || ||| | ||||| Sbjct 240 CAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGAGTGCGCCCATC 299 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 300 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 359 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||| || | |||||| | | || || || | ||||| || Sbjct 360 CTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 419 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 420 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177955156176794