Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq54459 100 1e-15 seq48027 86.0 2e-11 seq50922 84.2 9e-11 >seq54459 Length=6443 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| ||| | ||||| || || ||||||||||| | || || || || || Sbjct 5176 GTTACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 5117 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | ||||| || ||||| || ||||| || ||||| Sbjct 5116 AAAGATGCCGGAACCATTGCAGGGCTCAATGTACTGCGAATCATCAATGAGCCGACAGCT 5057 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 5056 GCTGCGATAGCCTATGGTCT 5037 >seq48027 Length=49226 Score = 86.0 bits (94), Expect = 2e-11 Identities = 234/353 (66%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| ||||| || ||||| || | || || ||| | || | | || | | Sbjct 525 TCCATGGTCCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAAGGTGCA 583 Query 451319 GA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 || ||| || || || || || ||||| |||||||| | || || || || || ||||| Sbjct 584 GAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGA 643 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || || || |||| | ||||| | || ||||| || || || ||||||||||| Sbjct 644 CGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGC 703 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTA 451492 | |||| || || || ||| || ||| | | | | ||| || ||| | | | Sbjct 704 TATAGCTTACGG-CTTGGACAA-GAAAGGTACGCGGGCTGGAGAGAAGAATGTGCTCATC 761 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| || || || || ||| ||| || | ||| ||||||| ||||| | ||| Sbjct 762 TTTGACTTGGGAGGGGGCACTTTCGATGTGTCCATCCTTACAATTGAGGATGGCATCTTT 821 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| | || |||||| || || || || || || || |||| || Sbjct 822 GAGGTGAAGTCCACAGCTGGTGACACCCACCTGGGTGGGGAGGACTTTGACAA 874 >seq50922 Length=6482 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| ||||||| || || | ||||| | || ||||| ||||||||| Sbjct 5900 AAAGCCAAGCCCCATATTCAGGTCGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 5841 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| ||||| ||||| Sbjct 5840 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACTGCAGA 5794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974098766562056