Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq54459 114 1e-19 seq5825 93.3 3e-13 >seq54459 Length=6443 Score = 114 bits (126), Expect = 1e-19 Identities = 362/554 (65%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| || ||||| Sbjct 4375 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 4434 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || ||||||| || || ||||| | ||||| Sbjct 4435 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCGCCAACCAGCACAAT 4493 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || || || | |||| | | ||||| || || || || Sbjct 4494 GTCATGGATCTGCGATTTGTCAAGCTTAGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 4553 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 517845 | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 4554 GGTGCCACGGAACAGGTCGGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 4611 Query 517846 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 || || ||||| || || | | |||||||| |||||| | | || || ||||| Sbjct 4612 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAG 4669 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 517960 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 4670 ACAGAGTACGCTTCGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 4729 Query 517961 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 |||| ||| | || | || | |||||| || | | | | || | Sbjct 4730 CGCTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATG 4785 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 4786 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 4845 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 4846 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 4905 Query 518141 AGTACATTCATTTC 518154 || |||||| |||| Sbjct 4906 AGAACATTCCTTTC 4919 >seq5825 Length=48216 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 25607 TGTTGTGGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 25666 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 25667 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 25726 Query 367113 TGATGG 367118 ||||| Sbjct 25727 CGATGG 25732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777647402403292